EMLSAG00000001584, EMLSAG00000001584-684350 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001584
Unique NameEMLSAG00000001584-684350
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001584 vs. L. salmonis peptides
Match: EMLSAP00000001584 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:95760:96281:-1 gene:EMLSAG00000001584 transcript:EMLSAT00000001584 description:"maker-LSalAtl2s1274-augustus-gene-0.24")

HSP 1 Score: 312.768 bits (800), Expect = 4.339e-110
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MKGSPVGIKLKMSHRMDCNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
            MKGSPVGIKLKMSHRMDCNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR
Sbjct:    1 MKGSPVGIKLKMSHRMDCNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
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BLAST of EMLSAG00000001584 vs. L. salmonis peptides
Match: EMLSAP00000011944 (pep:novel supercontig:LSalAtl2s:LSalAtl2s846:177909:178785:1 gene:EMLSAG00000011944 transcript:EMLSAT00000011944 description:"maker-LSalAtl2s846-augustus-gene-0.6")

HSP 1 Score: 253.062 bits (645), Expect = 9.173e-87
Identity = 119/140 (85.00%), Postives = 131/140 (93.57%), Query Frame = 0 
Query:   12 MSHRMDCNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
            MS  +DCNLDMKL+QSYSACPDEFGNASFLSSPTR+ELLMTR Q+LV QSNELSKNEMEM+QAL+STL+ CVE+MIS+IE E+TKNQDLRCNTIKH Q+IIQDRFHSIKPDEDEL+GFSSELQLF  DIDTFQDCVPGRR
Sbjct:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
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BLAST of EMLSAG00000001584 vs. L. salmonis peptides
Match: EMLSAP00000000699 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299:56785:-1 gene:EMLSAG00000000699 transcript:EMLSAT00000000699 description:"maker-LSalAtl2s110-augustus-gene-0.3")

HSP 1 Score: 247.669 bits (631), Expect = 1.176e-84
Identity = 116/140 (82.86%), Postives = 129/140 (92.14%), Query Frame = 0 
Query:   12 MSHRMDCNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
            MS  MDCNLDMKL+QSYSACPDEFGNASFLSSPTR+ELLMTR Q+LV QSNELSKNEMEM++AL++TL+  VE+MIS+IE E+TKNQDLRCNTIKH Q+IIQDRF SIKPDEDEL+GFSSELQLF  DIDTFQDCVPGRR
Sbjct:    1 MSRGMDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLKALRATLLYSVEEMISAIEAEITKNQDLRCNTIKHAQQIIQDRFRSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
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BLAST of EMLSAG00000001584 vs. L. salmonis peptides
Match: EMLSAP00000001316 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:82149:82639:-1 gene:EMLSAG00000001316 transcript:EMLSAT00000001316 description:"maker-LSalAtl2s1222-augustus-gene-0.7")

HSP 1 Score: 247.284 bits (630), Expect = 1.686e-84
Identity = 114/140 (81.43%), Postives = 130/140 (92.86%), Query Frame = 0 
Query:   12 MSHRMDCNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
            MS  M CNLD+KL+QSYS CPDEFGNASFLS+PTRLELLM+R Q+LV QSNELSKNEMEM+QAL++TL+SCVE+MI++IE E+TKNQDLRCNTIK+ Q+IIQDRFHSIKPDEDELKGFSSELQLF  D+DTFQDCVPGRR
Sbjct:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
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BLAST of EMLSAG00000001584 vs. L. salmonis peptides
Match: EMLSAP00000002948 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:22493:22980:-1 gene:EMLSAG00000002948 transcript:EMLSAT00000002948 description:"maker-LSalAtl2s1696-augustus-gene-0.5")

HSP 1 Score: 183.726 bits (465), Expect = 1.513e-59
Identity = 86/134 (64.18%), Postives = 111/134 (82.84%), Query Frame = 0 
Query:   18 CNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
            CNLD+K +QSYS CPDEF NASFLS+PTR+ELLM+RAQ+LV  SNEL+KNE EM+ ALK+TL+S V D+++++E E+TK Q+LRCNTIKH  E IQ+RFHS++PDE+ELK FSSELQ F   I++  DCV  ++
Sbjct:    8 CNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141
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BLAST of EMLSAG00000001584 vs. L. salmonis peptides
Match: EMLSAP00000002108 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:3406:1 gene:EMLSAG00000002108 transcript:EMLSAT00000002108 description:"maker-LSalAtl2s1398-augustus-gene-0.8")

HSP 1 Score: 106.301 bits (264), Expect = 2.236e-29
Identity = 52/125 (41.60%), Postives = 89/125 (71.20%), Query Frame = 0 
Query:   27 SYSACPDEFGNASFLSSPTRLELLM-TRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGR 150
            +Y +C D+F N+ FLSSPT+ E++M  +   LV+QSNELSKNE+EMI AL+++LV  V  +I+S+++++ + Q +RC+ +K V   +Q+ F+  + DE EL+ F++ELQ F ++I+   +C+  +
Sbjct:   16 NYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRK 140
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001584 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001584 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001584 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000015844.339e-110100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:9576... [more]
EMLSAP000000119449.173e-8785.00pep:novel supercontig:LSalAtl2s:LSalAtl2s846:17790... [more]
EMLSAP000000006991.176e-8482.86pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299... [more]
EMLSAP000000013161.686e-8481.43pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:8214... [more]
EMLSAP000000029481.513e-5964.18pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:2249... [more]
EMLSAP000000021082.236e-2941.60pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:... [more]
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BLAST of EMLSAG00000001584 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001584 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001584 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001584 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1274supercontigLSalAtl2s1274:95760..96281 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1274-augustus-gene-0.24
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001584 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001584EMLSAT00000001584-697431Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1274:95760..96281-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001584-684350 ID=EMLSAG00000001584-684350|Name=EMLSAG00000001584|organism=Lepeophtheirus salmonis|type=gene|length=522bp|location=Sequence derived from alignment at LSalAtl2s1274:95760..96281- (Lepeophtheirus salmonis)
ATGAAAGGATCCCCAGTAGGAATTAAATTAAAAATGTCTCATAGAATGGA
TTGTAATTTAGATATGAAGCTTGATCAGTCCTACTCAGCTTGTCCGGATG
AGTTTGGAAATGCCTCATTCCTGAGTAGCCCCACTAGGTTGGAACTTCTC
ATGACTAGAGCTCAAAGTTTAGTAAATCAATCTAATGAGCTAAGTAAAAA
TGTAATATTTTATAGAGATTATATGAGAAAGTATTTAACTACAGTTACTT
TTTATTATTTATTTTAGGAAATGGAAATGATTCAAGCATTGAAATCTACT
CTTGTATCCTGTGTTGAAGATATGATTTCTTCTATTGAGACAGAAATGAC
TAAGAATCAAGACTTAAGATGTAATACAATCAAACATGTTCAAGAAATTA
TTCAAGATCGATTTCATTCCATTAAGCCAGATGAAGATGAACTCAAAGGT
TTTTCATCGGAGTTACAACTTTTTTTTCATGACATTGATACATTTCAAGA
CTGTGTTCCTGGGCGCAGATAA
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