EMLSAG00000004427, EMLSAG00000004427-687193 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004427 vs. C. finmarchicus
Match: gi|592922930|gb|GAXK01035459.1| (TSA: Calanus finmarchicus comp616076_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 3.612e-1 Identity = 24/74 (32.43%), Postives = 35/74 (47.30%), Query Frame = 0 Query: 4 LVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPS 77 L G LF ++ TL Y N PP +S +++S P ++ V T +HL S P Y+ D+ FPS Sbjct: 205 LHGSALF-SVSTLLYVLQNHPPPRPRSLENLSSPAVESVLQGGTYSPHHLHQES---P*YLSDLQPCLSPPFPS 414
BLAST of EMLSAG00000004427 vs. C. finmarchicus
Match: gi|592869482|gb|GAXK01088080.1| (TSA: Calanus finmarchicus comp159480_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 3.373e+0 Identity = 12/39 (30.77%), Postives = 21/39 (53.85%), Query Frame = 0 Query: 84 LQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCL 122 +Q+ +G + D ++++C N+ PT CPG CL Sbjct: 304 VQLNVHGLGMEGDLIIRSCGNVL----PTRKCPGPTLCL 408
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000004427 (pep:novel supercontig:LSalAtl2s:LSalAtl2s231:166619:167331:1 gene:EMLSAG00000004427 transcript:EMLSAT00000004427 description:"maker-LSalAtl2s231-augustus-gene-1.7") HSP 1 Score: 279.256 bits (713), Expect = 2.287e-97 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 Query: 1 MNRLVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138 MNRLVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS Sbjct: 1 MNRLVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002144 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1454355:1455102:1 gene:EMLSAG00000002144 transcript:EMLSAT00000002144 description:"maker-LSalAtl2s139-augustus-gene-14.23") HSP 1 Score: 227.639 bits (579), Expect = 5.455e-77 Identity = 109/138 (78.99%), Postives = 120/138 (86.96%), Query Frame = 0 Query: 1 MNRLVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138 MNRLV LCLFIAIG L Y+SA SPPV I T+D+S+ +IQKVALE+TKFLYHLFD S ACPLY+KDVI A KQSFPSTVYELELQVETNGADFDCDYV KNCANI+VQ+PP NLCPGNQFCL PENL I+CVDI L+ Sbjct: 1 MNRLVALCLFIAIGALPYSSARSPPVLINPTRDISNSKIQKVALESTKFLYHLFDXSNACPLYVKDVIQAKKQSFPSTVYELELQVETNGADFDCDYVFKNCANIRVQEPPINLCPGNQFCLIPENLKGIDCVDINLT 138
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002147 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1478126:1479135:-1 gene:EMLSAG00000002147 transcript:EMLSAT00000002147 description:"maker-LSalAtl2s139-augustus-gene-14.29") HSP 1 Score: 132.88 bits (333), Expect = 8.975e-39 Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = 0 Query: 35 SDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTV-YELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDI 135 +DP ++++ E TKFLYH FDT+ ACP+++++V+ A +Q ++ YE+ELQVETNGADFDC+YV KNC N+++ QPP +LCPG +FCL P LN INCV+I Sbjct: 136 TDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEI 237
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000007005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s398:305820:307985:1 gene:EMLSAG00000007005 transcript:EMLSAT00000007005 description:"maker-LSalAtl2s398-snap-gene-3.25") HSP 1 Score: 105.916 bits (263), Expect = 1.103e-27 Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 0 Query: 35 SDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQ-FCLFPENLNNINCVDI 135 SDP I VA + TK+LY FDTS CPL++ +VI A +Q+ YELE+QVETNGADFDC++++KNC N++V +P CP + C+ P L +++C+++ Sbjct: 146 SDPIILNVAKKATKYLYGFFDTSNPCPLHLVEVIRAKQQAVMGFNYELEIQVETNGADFDCEHIIKNCENVRVHEPIAEFCPHEEPSCVVPVRLQDVDCIEV 247 HSP 2 Score: 70.0922 bits (170), Expect = 7.217e-15 Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = 0 Query: 26 VPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQ-FCLFPENLNNINCVD 134 VPI++++ Q + E KF YH FDT+ AC +++ D A + VY +E Q+ET ++ C + KNC N++V++ LCP N C+ PE L+ + C D Sbjct: 360 VPIEASKS------QLLGEEAAKFFYHFFDTNIACQVHVND---AQILKNVNDVYHMEFQLETRKSEEGCKSIKKNCKNVRVREIKPQLCPHNNPICIVPEQLDEVECSD 460
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002146 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1473318:1476139:1 gene:EMLSAG00000002146 transcript:EMLSAT00000002146 description:"snap_masked-LSalAtl2s139-processed-gene-14.16") HSP 1 Score: 103.99 bits (258), Expect = 1.223e-27 Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = 0 Query: 35 SDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCP-GNQFCLFPENLNNINCV 133 S+P IQKVA E+T FLYH F+T+ CPL++ ++ A++Q Y L+++VETN DF C++ +K+C ++Q+ QP +LCP G FCL P NLN++ C+ Sbjct: 162 SNPMIQKVAQESTNFLYHFFNTTHPCPLHVTKILHASEQMDHGINYLLDIEVETNEIDFYCEHEVKHCKSVQLHQPSPHLCPFGKHFCLIPTNLNDVTCI 261
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1427481:1429315:-1 gene:EMLSAG00000002142 transcript:EMLSAT00000002142 description:"snap_masked-LSalAtl2s139-processed-gene-14.19") HSP 1 Score: 103.219 bits (256), Expect = 5.814e-27 Identity = 52/122 (42.62%), Postives = 85/122 (69.67%), Query Frame = 0 Query: 19 ASANSPPVPI---KSTQDVSD-PEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQF-CLFPENLNNINCVDI 135 ++ PP+ I S ++V++ EIQKVA + KFLYHLF+TS ACP+++++V+ A++Q T Y+LE+QVET+GA+F+C+YV K C+NI V +P + CP ++ C+ P +L + C ++ Sbjct: 132 STNEDPPLVIGEYSSIENVTENEEIQKVAQKAVKFLYHLFNTSSACPIHLREVVQASEQIVDGTNYKLEIQVETDGANFECEYVQKQCSNIIVHEPLAH-CPHDEEDCILPVDLQEVECKEL 252
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002145 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1460230:1461759:-1 gene:EMLSAG00000002145 transcript:EMLSAT00000002145 description:"maker-LSalAtl2s139-augustus-gene-14.28") HSP 1 Score: 70.8626 bits (172), Expect = 5.845e-16 Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 26 VPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138 + I + Q DPE + ++ L T+ +C L+IK+ + YELELQVE DC Y KNC ++V QP NLCP +FCL P+NL C+ II S Sbjct: 67 INIDNVQSNIDPEDRVFKMD---LLLLSSSTNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISIIDS 176
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000003294 (pep:novel supercontig:LSalAtl2s:LSalAtl2s180:504339:505109:-1 gene:EMLSAG00000003294 transcript:EMLSAT00000003294 description:"maker-LSalAtl2s180-augustus-gene-4.20") HSP 1 Score: 50.447 bits (119), Expect = 1.332e-8 Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 0 Query: 42 VALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQF-CLFP 124 +A ++ KFLYH F TS CP+ +K + T T Y+ L ++T + C+ + C N+ + +P C + CLFP Sbjct: 134 LASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFP 217 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004427 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004427 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 8
BLAST of EMLSAG00000004427 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004427 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004427 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004427 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s231:166619..167331+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004427-687193 ID=EMLSAG00000004427-687193|Name=EMLSAG00000004427|organism=Lepeophtheirus salmonis|type=gene|length=713bp|location=Sequence derived from alignment at LSalAtl2s231:166619..167331+ (Lepeophtheirus salmonis)back to top Add to Basket
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