EMLSAG00000004427, EMLSAG00000004427-687193 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004427
Unique NameEMLSAG00000004427-687193
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000004427 vs. C. finmarchicus
Match: gi|592922930|gb|GAXK01035459.1| (TSA: Calanus finmarchicus comp616076_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 3.612e-1
Identity = 24/74 (32.43%), Postives = 35/74 (47.30%), Query Frame = 0
Query:    4 LVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPS 77
            L G  LF ++ TL Y   N PP   +S +++S P ++ V    T   +HL   S   P Y+ D+       FPS
Sbjct:  205 LHGSALF-SVSTLLYVLQNHPPPRPRSLENLSSPAVESVLQGGTYSPHHLHQES---P*YLSDLQPCLSPPFPS 414          
BLAST of EMLSAG00000004427 vs. C. finmarchicus
Match: gi|592869482|gb|GAXK01088080.1| (TSA: Calanus finmarchicus comp159480_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.373e+0
Identity = 12/39 (30.77%), Postives = 21/39 (53.85%), Query Frame = 0
Query:   84 LQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCL 122
            +Q+  +G   + D ++++C N+     PT  CPG   CL
Sbjct:  304 VQLNVHGLGMEGDLIIRSCGNVL----PTRKCPGPTLCL 408          
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000004427 (pep:novel supercontig:LSalAtl2s:LSalAtl2s231:166619:167331:1 gene:EMLSAG00000004427 transcript:EMLSAT00000004427 description:"maker-LSalAtl2s231-augustus-gene-1.7")

HSP 1 Score: 279.256 bits (713), Expect = 2.287e-97
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 MNRLVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138
            MNRLVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS
Sbjct:    1 MNRLVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138          
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002144 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1454355:1455102:1 gene:EMLSAG00000002144 transcript:EMLSAT00000002144 description:"maker-LSalAtl2s139-augustus-gene-14.23")

HSP 1 Score: 227.639 bits (579), Expect = 5.455e-77
Identity = 109/138 (78.99%), Postives = 120/138 (86.96%), Query Frame = 0
Query:    1 MNRLVGLCLFIAIGTLSYASANSPPVPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138
            MNRLV LCLFIAIG L Y+SA SPPV I  T+D+S+ +IQKVALE+TKFLYHLFD S ACPLY+KDVI A KQSFPSTVYELELQVETNGADFDCDYV KNCANI+VQ+PP NLCPGNQFCL PENL  I+CVDI L+
Sbjct:    1 MNRLVALCLFIAIGALPYSSARSPPVLINPTRDISNSKIQKVALESTKFLYHLFDXSNACPLYVKDVIQAKKQSFPSTVYELELQVETNGADFDCDYVFKNCANIRVQEPPINLCPGNQFCLIPENLKGIDCVDINLT 138          
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002147 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1478126:1479135:-1 gene:EMLSAG00000002147 transcript:EMLSAT00000002147 description:"maker-LSalAtl2s139-augustus-gene-14.29")

HSP 1 Score: 132.88 bits (333), Expect = 8.975e-39
Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = 0
Query:   35 SDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTV-YELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDI 135
            +DP ++++  E TKFLYH FDT+ ACP+++++V+ A +Q    ++ YE+ELQVETNGADFDC+YV KNC N+++ QPP +LCPG +FCL P  LN INCV+I
Sbjct:  136 TDPILKEIGEEATKFLYHKFDTTNACPIHLREVVRAKRQLISDSINYEIELQVETNGADFDCEYVHKNCDNVKLHQPPLHLCPGKKFCLIPVKLNEINCVEI 237          
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000007005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s398:305820:307985:1 gene:EMLSAG00000007005 transcript:EMLSAT00000007005 description:"maker-LSalAtl2s398-snap-gene-3.25")

HSP 1 Score: 105.916 bits (263), Expect = 1.103e-27
Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 0
Query:   35 SDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQ-FCLFPENLNNINCVDI 135
            SDP I  VA + TK+LY  FDTS  CPL++ +VI A +Q+     YELE+QVETNGADFDC++++KNC N++V +P    CP  +  C+ P  L +++C+++
Sbjct:  146 SDPIILNVAKKATKYLYGFFDTSNPCPLHLVEVIRAKQQAVMGFNYELEIQVETNGADFDCEHIIKNCENVRVHEPIAEFCPHEEPSCVVPVRLQDVDCIEV 247          

HSP 2 Score: 70.0922 bits (170), Expect = 7.217e-15
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = 0
Query:   26 VPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQ-FCLFPENLNNINCVD 134
            VPI++++       Q +  E  KF YH FDT+ AC +++ D   A      + VY +E Q+ET  ++  C  + KNC N++V++    LCP N   C+ PE L+ + C D
Sbjct:  360 VPIEASKS------QLLGEEAAKFFYHFFDTNIACQVHVND---AQILKNVNDVYHMEFQLETRKSEEGCKSIKKNCKNVRVREIKPQLCPHNNPICIVPEQLDEVECSD 460          
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002146 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1473318:1476139:1 gene:EMLSAG00000002146 transcript:EMLSAT00000002146 description:"snap_masked-LSalAtl2s139-processed-gene-14.16")

HSP 1 Score: 103.99 bits (258), Expect = 1.223e-27
Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query:   35 SDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCP-GNQFCLFPENLNNINCV 133
            S+P IQKVA E+T FLYH F+T+  CPL++  ++ A++Q      Y L+++VETN  DF C++ +K+C ++Q+ QP  +LCP G  FCL P NLN++ C+
Sbjct:  162 SNPMIQKVAQESTNFLYHFFNTTHPCPLHVTKILHASEQMDHGINYLLDIEVETNEIDFYCEHEVKHCKSVQLHQPSPHLCPFGKHFCLIPTNLNDVTCI 261          
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1427481:1429315:-1 gene:EMLSAG00000002142 transcript:EMLSAT00000002142 description:"snap_masked-LSalAtl2s139-processed-gene-14.19")

HSP 1 Score: 103.219 bits (256), Expect = 5.814e-27
Identity = 52/122 (42.62%), Postives = 85/122 (69.67%), Query Frame = 0
Query:   19 ASANSPPVPI---KSTQDVSD-PEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQF-CLFPENLNNINCVDI 135
            ++   PP+ I    S ++V++  EIQKVA +  KFLYHLF+TS ACP+++++V+ A++Q    T Y+LE+QVET+GA+F+C+YV K C+NI V +P  + CP ++  C+ P +L  + C ++
Sbjct:  132 STNEDPPLVIGEYSSIENVTENEEIQKVAQKAVKFLYHLFNTSSACPIHLREVVQASEQIVDGTNYKLEIQVETDGANFECEYVQKQCSNIIVHEPLAH-CPHDEEDCILPVDLQEVECKEL 252          
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000002145 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:1460230:1461759:-1 gene:EMLSAG00000002145 transcript:EMLSAT00000002145 description:"maker-LSalAtl2s139-augustus-gene-14.28")

HSP 1 Score: 70.8626 bits (172), Expect = 5.845e-16
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0
Query:   26 VPIKSTQDVSDPEIQKVALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQFCLFPENLNNINCVDIILS 138
            + I + Q   DPE +   ++    L     T+ +C L+IK+ +           YELELQVE      DC Y  KNC  ++V QP  NLCP  +FCL P+NL    C+ II S
Sbjct:   67 INIDNVQSNIDPEDRVFKMD---LLLLSSSTNGSCGLHIKNCLDVQIHMNEGISYELELQVEVESDLTDCPYKFKNCNGVKVFQPYPNLCPNKKFCLLPQNLEKTTCISIIDS 176          
BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Match: EMLSAP00000003294 (pep:novel supercontig:LSalAtl2s:LSalAtl2s180:504339:505109:-1 gene:EMLSAG00000003294 transcript:EMLSAT00000003294 description:"maker-LSalAtl2s180-augustus-gene-4.20")

HSP 1 Score: 50.447 bits (119), Expect = 1.332e-8
Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 0
Query:   42 VALETTKFLYHLFDTSKACPLYIKDVIXATKQSFPSTVYELELQVETNGADFDCDYVLKNCANIQVQQPPTNLCPGNQF-CLFP 124
            +A ++ KFLYH F TS  CP+ +K +   T      T Y+  L ++T   +  C+   + C N+ + +P    C    + CLFP
Sbjct:  134 LASKSVKFLYHYFSTSTFCPMELKKISNMTSMRGGGTYYKFNLDLQTIPIEKGCEKEYRRCENVHIFKPNEKNCKLLDYDCLFP 217          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004427 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004427 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592922930|gb|GAXK01035459.1|3.612e-132.43TSA: Calanus finmarchicus comp616076_c0_seq1 trans... [more]
gi|592869482|gb|GAXK01088080.1|3.373e+030.77TSA: Calanus finmarchicus comp159480_c0_seq1 trans... [more]
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BLAST of EMLSAG00000004427 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 8
Match NameE-valueIdentityDescription
EMLSAP000000044272.287e-97100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s231:16661... [more]
EMLSAP000000021445.455e-7778.99pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14543... [more]
EMLSAP000000021478.975e-3955.88pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14781... [more]
EMLSAP000000070051.103e-2747.06pep:novel supercontig:LSalAtl2s:LSalAtl2s398:30582... [more]
EMLSAP000000021461.223e-2746.00pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14733... [more]
EMLSAP000000021425.814e-2742.62pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14274... [more]
EMLSAP000000021455.845e-1637.17pep:novel supercontig:LSalAtl2s:LSalAtl2s139:14602... [more]
EMLSAP000000032941.332e-830.95pep:novel supercontig:LSalAtl2s:LSalAtl2s180:50433... [more]
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BLAST of EMLSAG00000004427 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004427 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004427 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004427 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s231supercontigLSalAtl2s231:166619..167331 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s231-augustus-gene-1.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004427 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004427EMLSAT00000004427-700274Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s231:166619..167331+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004427-687193 ID=EMLSAG00000004427-687193|Name=EMLSAG00000004427|organism=Lepeophtheirus salmonis|type=gene|length=713bp|location=Sequence derived from alignment at LSalAtl2s231:166619..167331+ (Lepeophtheirus salmonis)
TCTTTTAGTTATCAGTGAATAATAACACAATGAATCGTTTAGTCGGACTT TGTCTCTTCATTGCCATAGGAACACTTTCATATGGTTAGTATCCAACTCC TCACTTTCATCCTCATTAATCTTATCGATTTTTTCCATCCAGCTTCTGCA AATTCCCCTCCTGTTCCCATCAAATCCACTCAAGATGTCTCTGATCCAGA GATACAAAAAGTAGCATTGGAGACGACCAAGTTCCTGTATCATCTTTTTG ACACCTCCAAAGCCTGCCCACTCTATATCAAGGATGTTATTSGAGCCACA AAACAAGTAAGATATACATACTCTTAGTAGTTATATTATATTAAATTCTC CCTCTTTGGGATTCAGTCCTTCCCAAGCACAGTCTACGAATTAGAGTTAC AAGTTGAGACAAATGGAGCTGATTTTGATTGTGATTATGTCCTCAAGAAC TGTGCCAATATTCAAGTTCAACAACCACCCACCAATTTGTGTCCAGGAAA TCAATTTTGTCTCTTTCCAGAGAATTTAAATAACATTAATTGCGTGGACA TTATTTTGAGTTAGTCCTCATGGATTTATTGATCTAAAACGAATATTTTT TCCAGCCTTTAACTGAAAAATACTTGTACGTTACATAAATCGGAATAGAA AGATTTCTTTGTAAACTTTCCTTGAAATATGTTAAATAAATATATTTTTA ATAAAATGATAAA
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