EMLSAG00000005923, EMLSAG00000005923-688689 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592789951|gb|GAXK01164617.1| (TSA: Calanus finmarchicus comp599346_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 6.907e-1 Identity = 11/30 (36.67%), Postives = 19/30 (63.33%), Query Frame = 0 Query: 29 EEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58 + + F C+LC R+KH++SL +H + H Sbjct: 227 DSAAETFPCTLCDKRFKHNNSLSKHINAVH 316
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592765327|gb|GAXK01189241.1| (TSA: Calanus finmarchicus comp856307_c0_seq4 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 7.569e-1 Identity = 12/37 (32.43%), Postives = 22/37 (59.46%), Query Frame = 0 Query: 37 CSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLK 73 C C + SSL H ++AH+ ++++++ R KLK Sbjct: 260 CDYCDKKLTSKSSLILHIRTAHNTDFDDKLGGRQKLK 370
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592851986|gb|GAXK01105558.1| (TSA: Calanus finmarchicus comp185798_c2_seq2 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 8.399e-1 Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0 Query: 9 LDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58 D K+ ES L V E G Q +DCS C +Y +L+ H K+ H Sbjct: 318 CDYKVKESRELKRHKDVKHTEGGGQTYDCSKCDKKYTRPQNLYVHIKAHH 467
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592749480|gb|GAXK01204933.1| (TSA: Calanus finmarchicus comp364667_c0_seq3 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 8.735e-1 Identity = 15/30 (50.00%), Postives = 17/30 (56.67%), Query Frame = 0 Query: 29 EEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58 E G+QRF C LC Y SSL RH + H Sbjct: 551 EPGKQRFSCDLCGKAYADSSSLKRHINTNH 640
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592765329|gb|GAXK01189239.1| (TSA: Calanus finmarchicus comp856307_c0_seq2 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 8.751e-1 Identity = 12/37 (32.43%), Postives = 22/37 (59.46%), Query Frame = 0 Query: 37 CSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLK 73 C C + SSL H ++AH+ ++++++ R KLK Sbjct: 260 CDYCDKKLTSKSSLILHIRTAHNTDFDDKLGGRQKLK 370
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592851987|gb|GAXK01105557.1| (TSA: Calanus finmarchicus comp185798_c2_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 9.502e-1 Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0 Query: 9 LDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58 D K+ ES L V E G Q +DCS C +Y +L+ H K+ H Sbjct: 318 CDYKVKESRELKRHKDVKHTEGGGQTYDCSKCDKKYTRPQNLYVHIKAHH 467
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592878412|gb|GAXK01079489.1| (TSA: Calanus finmarchicus comp2994506_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 1.016e+0 Identity = 23/89 (25.84%), Postives = 41/89 (46.07%), Query Frame = 0 Query: 25 VVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAK 113 V T + F C C RYK+H +L RH +S H + E + + + + + +I + + R+ + L + K+KE + E K Sbjct: 256 VKTFHKDDCPFQCEDCGKRYKYHGALKRHRQSVHERTGENSIVISFGQQKQHNCSIC-SKVFKRKDLLNKHLVTHDKSKEKFSCEECGK 519
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592803913|gb|GAXK01150655.1| (TSA: Calanus finmarchicus comp155055_c0_seq5 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.060e+0 Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 0 Query: 31 GQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEER 65 G++ F C LC+ RY SL RH + H ++ER Sbjct: 70 GEKPFSCQLCNKRYPIVKSLKRHLRLNHGDSFQER 174
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592787391|gb|GAXK01167177.1| (TSA: Calanus finmarchicus comp1193_c26_seq551 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.101e+0 Identity = 15/53 (28.30%), Postives = 26/53 (49.06%), Query Frame = 0 Query: 6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58 + ++ N ++ I +E+ +F CS+CH +K S+ RH KS H Sbjct: 266 FQSINNGFNGCLSILGFNISEVVEDHVNKFVCSICHVEFKDKSNCRRHVKSVH 424
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592941547|gb|GAXK01017006.1| (TSA: Calanus finmarchicus comp72331_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 1.393e+0 Identity = 10/28 (35.71%), Postives = 20/28 (71.43%), Query Frame = 0 Query: 31 GQQRFDCSLCHSRYKHHSSLFRHFKSAH 58 G++ F C LC +R++ + L++HF+ +H Sbjct: 3173 GERPFSCVLCLNRFRQKAHLYKHFRCSH 3256
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28") HSP 1 Score: 452.21 bits (1162), Expect = 9.762e-163 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 Query: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT Sbjct: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2") HSP 1 Score: 121.324 bits (303), Expect = 7.646e-33 Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0 Query: 6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139 + + D KI +L+S+MIV L+ G RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR LKAER+ G PY+RR+N KR + K NKEN + PT+ ++ + V + ++ P S Sbjct: 7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20") HSP 1 Score: 101.293 bits (251), Expect = 8.496e-26 Identity = 56/138 (40.58%), Postives = 91/138 (65.94%), Query Frame = 0 Query: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKEN--------TTSESVAKEAESPTKSTSKTSTVNV 130 M KK + +LD K+ E + L+S+M+++ L++G+ RFDC++C RYKHH SLFRHF+SAH ++Y + ++LR ++++ER AA G Y RR+N KR +R ++ NKEN TT + ++ E S + + +T+ V Sbjct: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQV 138 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005923 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000005923 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005923 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005923 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000005923 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s31:790246..791300- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005923-688689 ID=EMLSAG00000005923-688689|Name=EMLSAG00000005923|organism=Lepeophtheirus salmonis|type=gene|length=1055bp|location=Sequence derived from alignment at LSalAtl2s31:790246..791300- (Lepeophtheirus salmonis)back to top Add to Basket
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