EMLSAG00000005923, EMLSAG00000005923-688689 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005923
Unique NameEMLSAG00000005923-688689
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
L F95 UN17_g1274 female
  1. PreAdult
  2. Adult
 -Missing-
no visible phenotype 		17.04.2013 - 14:29
10.06.2013 - 00:00
Homology
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BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592916237|gb|GAXK01042138.1| (TSA: Calanus finmarchicus comp1004986_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.655e+0
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 0 
Query:   33 QRFDCSLCHSRYKHHSSLFRHFKSAH 58
            +RF C  C   + H S L+RH K+ H
Sbjct:  141 ERFQCKQCEKHFSHRSPLYRHVKTVH 218
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BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592861463|gb|GAXK01096099.1| (TSA: Calanus finmarchicus comp55712_c5_seq5 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.859e+0
Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:   32 QQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYE 63
            ++ FDC +C   +K   +L RH+  +HHK  E
Sbjct:  584 KEPFDCPICKKAHKKRETLVRHYAISHHKLIE 679
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BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592861462|gb|GAXK01096100.1| (TSA: Calanus finmarchicus comp55712_c5_seq6 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.915e+0
Identity = 11/29 (37.93%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   32 QQRFDCSLCHSRYKHHSSLFRHFKSAHHK 60
            ++ FDC +C   +K   +L RH+  +HHK
Sbjct:  572 KEPFDCPICKKAHKKRETLVRHYAISHHK 658
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BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592787267|gb|GAXK01167301.1| (TSA: Calanus finmarchicus comp1193_c26_seq675 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.036e+0
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   33 QRFDCSLCHSRYKHHSSLFRHFKSAHHKE 61
            +RF CSLC   +   S+  RH KSAH +E
Sbjct:  170 ERFQCSLCTKLFTDKSNCRRHIKSAHFQE 256
[Close]
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592919172|gb|GAXK01039203.1| (TSA: Calanus finmarchicus comp1486232_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.154e+0
Identity = 17/46 (36.96%), Postives = 25/46 (54.35%), Query Frame = 0 
Query:   30 EGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAE 75
            EG ++F C+LC  R++H      H  S H+K    R  L++ LK E
Sbjct:  324 EGSKQFKCNLCLKRFRHEVGRKHHMNSQHNK---RRADLKMDLKIE 452
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BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28")

HSP 1 Score: 452.21 bits (1162), Expect = 9.762e-163
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 
Query:    1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224
            MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT
Sbjct:    1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224
[Close]
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2")

HSP 1 Score: 121.324 bits (303), Expect = 7.646e-33
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0 
Query:    6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139
            + + D KI    +L+S+MIV  L+ G  RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR  LKAER+     G PY+RR+N KR  +  K NKEN +          PT+ ++  + V +  ++  P S
Sbjct:    7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140
[Close]
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20")

HSP 1 Score: 101.293 bits (251), Expect = 8.496e-26
Identity = 56/138 (40.58%), Postives = 91/138 (65.94%), Query Frame = 0 
Query:    1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKEN--------TTSESVAKEAESPTKSTSKTSTVNV 130
            M KK + +LD K+ E + L+S+M+++ L++G+ RFDC++C  RYKHH SLFRHF+SAH ++Y + ++LR ++++ER AA   G  Y RR+N KR +R ++ NKEN        TT + ++ E  S   +  + +T+ V
Sbjct:    1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQV 138
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005923 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005923 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592916237|gb|GAXK01042138.1|1.655e+042.31TSA: Calanus finmarchicus comp1004986_c0_seq1 tran... [more]
gi|592861463|gb|GAXK01096099.1|1.859e+037.50TSA: Calanus finmarchicus comp55712_c5_seq5 transc... [more]
gi|592861462|gb|GAXK01096100.1|1.915e+037.93TSA: Calanus finmarchicus comp55712_c5_seq6 transc... [more]
gi|592787267|gb|GAXK01167301.1|2.036e+048.28TSA: Calanus finmarchicus comp1193_c26_seq675 tran... [more]
gi|592919172|gb|GAXK01039203.1|2.154e+036.96TSA: Calanus finmarchicus comp1486232_c0_seq3 tran... [more]

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BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000059239.762e-163100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246... [more]
EMLSAP000000116187.646e-3344.78pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392... [more]
EMLSAP000000116178.496e-2640.58pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552... [more]
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BLAST of EMLSAG00000005923 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005923 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005923 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005923 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s31supercontigLSalAtl2s31:790246..791300 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s31-snap-gene-8.28
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005923 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005923EMLSAT00000005923-701770Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s31:790246..791300-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005923-688689 ID=EMLSAG00000005923-688689|Name=EMLSAG00000005923|organism=Lepeophtheirus salmonis|type=gene|length=1055bp|location=Sequence derived from alignment at LSalAtl2s31:790246..791300- (Lepeophtheirus salmonis)
ATGTTGAAAAAGCGTATTGAACACTTGGATCCCAAAATAAACGAAAGTGC
AGCATTGGCATCCCTAATGATTGTTGTCACGTTAGAAGAAGGACAACAAA
GATTCGATTGCAGCTTGTGTCACAGTCGTTATAAACATCATTCTTCCCTA
TTTCGACATTTTAAATCCGCCCATCACAAAGAATATGAAGAAAGAGTAGC
TTTGAGGGTAAAATTAAAGGCTGAAAGGGATGCTGCGATATCCCGGGGGG
AACCTTATTTACGTAGACGTAATAGTAAGCGGGGCTTACGAAGTGTTAAA
AAGAACAAGGAGAATACTACCTCAGAATCTGTTGCGAAGGAAGCAGAATC
TCCTACAAAATCAACAAGTAAGACATCGACAGTTAATGTTAAACACGAGT
TTAAATCTCCAAAATCACCAGCCAAGAGTCAGAAAAAAAACATCATTCAT
ATAAAAATTCAACCCAAAGTTGAGGAACCTCACATTTCGTCTTTAGAAGA
GGACACTGAGCTTCTTATGAAAAAGCTTGGAGAATCCACTAATGAACAAA
TAATACCTAATGGGACTATACAAAATATTACTCCATCTGTTGTACTTATC
CCTATTAAAAAGGTGCCTTTSCAGCCACAGAATATTAAAGAKCAGCCTAT
CTATGATCCATCCCTTCCACTTGACCTGAGTTTGAAGGATGTAAAGGAAG
ATCATTCTGCTTCAACATTGAATCACTGATTCGAAAAGAATATTAAAAAA
AACTTTGTTTTGAAACCTATAGAATGCATGTTATTTTAGCATTTTCCCTG
TTTTACTTGTGATCTATTAATTTAATTTCATTTACGAAATTATATGGTTG
TTAATAAATAATTTGAATTTATTTACTTAAAATGTACTTGTTTTGACAAT
CATTCGAGACTATTGAAATATATTAAATGTGGTTAGAATGAGATTGCGTC
TTAATCAAATTCTTCTATTTTAAAATCTTCTTCATCTTCAAGGGTGAGCT
GAGAGTCCATAGTTTGAGACGGATTAATCACGTTGCATTGAAAACGATGA
CTTGA
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