EMLSAG00000005923, EMLSAG00000005923-688689 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592916237|gb|GAXK01042138.1| (TSA: Calanus finmarchicus comp1004986_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.655e+0 Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 0 Query: 33 QRFDCSLCHSRYKHHSSLFRHFKSAH 58 +RF C C + H S L+RH K+ H Sbjct: 141 ERFQCKQCEKHFSHRSPLYRHVKTVH 218
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592861463|gb|GAXK01096099.1| (TSA: Calanus finmarchicus comp55712_c5_seq5 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.859e+0 Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 0 Query: 32 QQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYE 63 ++ FDC +C +K +L RH+ +HHK E Sbjct: 584 KEPFDCPICKKAHKKRETLVRHYAISHHKLIE 679
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592861462|gb|GAXK01096100.1| (TSA: Calanus finmarchicus comp55712_c5_seq6 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 1.915e+0 Identity = 11/29 (37.93%), Postives = 18/29 (62.07%), Query Frame = 0 Query: 32 QQRFDCSLCHSRYKHHSSLFRHFKSAHHK 60 ++ FDC +C +K +L RH+ +HHK Sbjct: 572 KEPFDCPICKKAHKKRETLVRHYAISHHK 658
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592787267|gb|GAXK01167301.1| (TSA: Calanus finmarchicus comp1193_c26_seq675 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 2.036e+0 Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 0 Query: 33 QRFDCSLCHSRYKHHSSLFRHFKSAHHKE 61 +RF CSLC + S+ RH KSAH +E Sbjct: 170 ERFQCSLCTKLFTDKSNCRRHIKSAHFQE 256
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592919172|gb|GAXK01039203.1| (TSA: Calanus finmarchicus comp1486232_c0_seq3 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 2.154e+0 Identity = 17/46 (36.96%), Postives = 25/46 (54.35%), Query Frame = 0 Query: 30 EGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAE 75 EG ++F C+LC R++H H S H+K R L++ LK E Sbjct: 324 EGSKQFKCNLCLKRFRHEVGRKHHMNSQHNK---RRADLKMDLKIE 452
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28") HSP 1 Score: 452.21 bits (1162), Expect = 9.762e-163 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 Query: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT Sbjct: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2") HSP 1 Score: 121.324 bits (303), Expect = 7.646e-33 Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0 Query: 6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139 + + D KI +L+S+MIV L+ G RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR LKAER+ G PY+RR+N KR + K NKEN + PT+ ++ + V + ++ P S Sbjct: 7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20") HSP 1 Score: 101.293 bits (251), Expect = 8.496e-26 Identity = 56/138 (40.58%), Postives = 91/138 (65.94%), Query Frame = 0 Query: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKEN--------TTSESVAKEAESPTKSTSKTSTVNV 130 M KK + +LD K+ E + L+S+M+++ L++G+ RFDC++C RYKHH SLFRHF+SAH ++Y + ++LR ++++ER AA G Y RR+N KR +R ++ NKEN TT + ++ E S + + +T+ V Sbjct: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQV 138 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005923 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000005923 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005923 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005923 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000005923 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s31:790246..791300- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005923-688689 ID=EMLSAG00000005923-688689|Name=EMLSAG00000005923|organism=Lepeophtheirus salmonis|type=gene|length=1055bp|location=Sequence derived from alignment at LSalAtl2s31:790246..791300- (Lepeophtheirus salmonis)back to top Add to Basket
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