EMLSAG00000008834, EMLSAG00000008834-691600 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008834
Unique NameEMLSAG00000008834-691600
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008834 vs. GO
Match: - (symbol:si:rp71-40n14.1 "si:rp71-40n14.1" species:7955 "Danio rerio" [GO:0006629 "lipid metabolic process" evidence=IEA] InterPro:IPR007856 Pfam:PF05184 ZFIN:ZDB-GENE-030131-7503 GO:GO:0006629 Gene3D:1.10.225.10 InterPro:IPR008138 InterPro:IPR011001 InterPro:IPR008139 Pfam:PF03489 SMART:SM00741 SUPFAM:SSF47862 PROSITE:PS50015 EMBL:BX323450 EMBL:AY184216 RefSeq:NP_997906.1 UniGene:Dr.80845 STRING:7955.ENSDARP00000064632 Ensembl:ENSDART00000064633 GeneID:335563 KEGG:dre:335563 eggNOG:NOG133695 GeneTree:ENSGT00510000050935 HOGENOM:HOG000145515 HOVERGEN:HBG066351 InParanoid:Q7T3Q1 OMA:RTICANI OrthoDB:EOG7PCJKM TreeFam:TF352354 NextBio:20810914 Uniprot:Q7T3Q1)

HSP 1 Score: 41.9726 bits (97), Expect = 6.936e-5
Identity = 23/78 (29.49%), Postives = 37/78 (47.44%), Query Frame = 0 
Query:   30 CDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            C  CK+ LGK+   + +    DE   QL ++CD++    GFL   C  F+ + +   IE+ L+T       C    +C
Sbjct:   47 CWACKWALGKVKRKISNGATQDEIKVQLSQVCDQI----GFLKSLCRGFVNKYMDVLIEE-LSTTDNARTICANISVC 119
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592857040|gb|GAXK01100504.1| (TSA: Calanus finmarchicus comp6655_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 2.541e-1
Identity = 20/100 (20.00%), Postives = 45/100 (45.00%), Query Frame = 0 
Query:    4 FILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKK 103
            F  C L+A +S+ +   P+     + C+ C  ++   +  + S++   E +  + ++C  + ++      TC+  IE  +   I+DL+ +   P   C  
Sbjct:  171 FFACLLVAASSSPS---PR---NALTCEICVDIVTDFDNWLTSDKTEAEIVDYIKQLCHTLGQIIAGFEATCNFLIESQLPGIIDDLVNSNLDPLTVCTS 452
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592857118|gb|GAXK01100426.1| (TSA: Calanus finmarchicus comp7169_c7_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.195e-1
Identity = 26/107 (24.30%), Postives = 50/107 (46.73%), Query Frame = 0 
Query:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            M++ I   L+     + +  P+ NE T  C+ C  ++  I+  + SE   ++ L   ++IC+  +++   +G TC  F+E      IE ++     P+E C     C
Sbjct: 3044 MKLIISTLLLLATLGSNLAAPR-NELT--CEICIDIITDIDNFITSETTEEDILAFFNQICEAADQLLPGIGATCTGFLENNGPGIIESIVNENLNPDEICAMLTAC 3355
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592768699|gb|GAXK01185869.1| (TSA: Calanus finmarchicus comp44773_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.657e-1
Identity = 23/89 (25.84%), Postives = 37/89 (41.57%), Query Frame = 0 
Query:   19 GEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
              P  N+ T  C  CK V+  +++ +    N +     L EIC     +   L   CD  I E     IE L+    +P++ C +  +C
Sbjct:   93 APPPRNDLT--CSLCKTVMELLDQYITDTTNEEAIADALKEIC---ALLPAPLDAECDAMISEYTDDIIELLVNEYLSPQQVCDELTLC 344
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592857039|gb|GAXK01100505.1| (TSA: Calanus finmarchicus comp6655_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.055e-1
Identity = 20/94 (21.28%), Postives = 45/94 (47.87%), Query Frame = 0 
Query:    4 FILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTP 97
            F+ C L+A +S+ +   P+     + C+ C  ++   +  + S++   E +  + E+C  + ++      TC+  IE  +   I+DL+ +   P
Sbjct:   47 FLSCLLVAASSSPS---PR---NALTCEICVDIVTDFDNWLTSDKTEAEIVDYIKELCHALGQLIAGFEATCNFLIESQLPGIIDDLVNSNLDP 310
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592766462|gb|GAXK01188106.1| (TSA: Calanus finmarchicus comp10792_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 6.084e-1
Identity = 17/78 (21.79%), Postives = 37/78 (47.44%), Query Frame = 0 
Query:   30 CDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            C  C++VL ++ + +   +  ++  + ++ ICD    + G + + C  F+ +  +P I   L  +  P E C    +C
Sbjct:  543 CVLCEYVLHELQQYIKDGQTEEQIKKTVEAICD---HMPGLVKKECKSFV-DTYEPAIVAFLVNEIEPTEVCPMLHLC 764

HSP 2 Score: 29.6462 bits (65), Expect = 1.812e+0
Identity = 18/79 (22.78%), Postives = 37/79 (46.84%), Query Frame = 0 
Query:   29 KCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
             C  C+F + ++   +  +++ D     L+ IC +   +   +  TC+ F+ E     I +L+    TP+E C   ++C
Sbjct:  252 NCAMCEFAINEVFSILKDKDDQDMVKNALESICYR---LPTSVERTCESFV-ETYTASIINLIVQGFTPDEVCSALDLC 476
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592857114|gb|GAXK01100430.1| (TSA: Calanus finmarchicus comp7169_c9_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 6.778e-1
Identity = 16/62 (25.81%), Postives = 29/62 (46.77%), Query Frame = 0 
Query:   46 SEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            SE   ++ L   ++IC+  +++   +G TC  F+E      IE ++     P+E C     C
Sbjct:  194 SETTEEDILAFFNQICEAADQLLPGIGATCTGFLENNGPGIIESIVNENLNPDEICAMLTAC 379
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592766464|gb|GAXK01188104.1| (TSA: Calanus finmarchicus comp10792_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 7.338e-1
Identity = 17/78 (21.79%), Postives = 37/78 (47.44%), Query Frame = 0 
Query:   30 CDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            C  C++VL ++ + +   +  ++  + ++ ICD    + G + + C  F+ +  +P I   L  +  P E C    +C
Sbjct:  543 CVLCEYVLHELQQYIKDGQTEEQIKKTVEAICD---HMPGLVKKECKSFV-DTYEPAIVAFLVNEIEPTEVCPMLHLC 764

HSP 2 Score: 29.261 bits (64), Expect = 2.808e+0
Identity = 18/79 (22.78%), Postives = 37/79 (46.84%), Query Frame = 0 
Query:   29 KCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
             C  C+F + ++   +  +++ D     L+ IC +   +   +  TC+ F+ E     I +L+    TP+E C   ++C
Sbjct:  252 NCAMCEFAINEVFSILKDKDDQDMVKNALESICYR---LPTSVERTCESFV-ETYTASIINLIVQGFTPDEVCSALDLC 476

HSP 3 Score: 29.261 bits (64), Expect = 2.892e+0
Identity = 18/78 (23.08%), Postives = 40/78 (51.28%), Query Frame = 0 
Query:   30 CDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            C  CK ++G+  +++ S +  +E  + L+  CD +      + + C K  +E + P++ + LA++  P+  C    +C
Sbjct: 1503 CKICKDMVGEARDTLMSNDTQEELKEVLEGSCDLIP--LAIIAKECKKLSDEFI-PELVETLASEMNPDTVCTVAGLC 1727
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592755013|gb|GAXK01199400.1| (TSA: Calanus finmarchicus comp121505_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 8.200e-1
Identity = 24/83 (28.92%), Postives = 39/83 (46.99%), Query Frame = 0 
Query:   28 MKCDFCKFVLGKINESVF---SEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            + C  C+ V+  ++E++    SE+ V E L Q   IC+ +      L   CD+F+ E     I+ L+     P+E CK    C
Sbjct:  131 LTCTICEAVMTALDEALVDPASEQAVAEFLLQ---ICNYL---GANLETICDEFLGEYTDDIIDQLVDQFLNPDEVCKAITAC 361
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592786346|gb|GAXK01168222.1| (TSA: Calanus finmarchicus comp883_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.729e+0
Identity = 15/76 (19.74%), Postives = 35/76 (46.05%), Query Frame = 0 
Query:   28 MKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKK 103
            + C  C  ++   +E + S++   E +  ++E+C  + ++      TC+  +E  +   I+DL+ +   P   C  
Sbjct:  175 LTCQICVDIVTDFDEWLTSDKTEQEIITFVEELCHAIGQLITGFEATCNALVEAQLPAIIDDLVNSNLDPLTVCTS 402
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592788632|gb|GAXK01165936.1| (TSA: Calanus finmarchicus comp1484_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.874e+0
Identity = 13/28 (46.43%), Postives = 16/28 (57.14%), Query Frame = 0 
Query:   31 DFCKFVLGKINESVFSEENVDEALQQLD 58
            D+C  V    N  VFSEE VD+ L + D
Sbjct: 2703 DYCGAVSAGTNGQVFSEEQVDQLLDRSD 2786
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BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000008834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754:713146:-1 gene:EMLSAG00000008834 transcript:EMLSAT00000008834 description:"maker-LSalAtl2s54-snap-gene-6.37")

HSP 1 Score: 211.075 bits (536), Expect = 1.471e-71
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC
Sbjct:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
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BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000011320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s780:164064:164683:1 gene:EMLSAG00000011320 transcript:EMLSAT00000011320 description:"maker-LSalAtl2s780-augustus-gene-1.14")

HSP 1 Score: 118.627 bits (296), Expect = 3.563e-35
Identity = 53/107 (49.53%), Postives = 78/107 (72.90%), Query Frame = 0 
Query:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            M+  +L AL+AVASA T+ + +  EK+ KCDFCK+++   NESV + +N D A++Q++EIC + +  S FLGETC KF+ +V+KPKIE++LA+K  PE  CK  +MC
Sbjct:    1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
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BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000001115 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:244812:273376:-1 gene:EMLSAG00000001115 transcript:EMLSAT00000001115 description:"augustus_masked-LSalAtl2s1186-processed-gene-1.12")

HSP 1 Score: 122.094 bits (305), Expect = 4.679e-34
Identity = 51/99 (51.52%), Postives = 77/99 (77.78%), Query Frame = 0 
Query:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEE 99
            MR   L AL+AVASA T+ + +  EK++KCD CK+++ K+NESV +++N D+ +++++EIC + +EVS FLGETC +F+ +V+KPKIEDLLA K  PE+
Sbjct:    4 MRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEK 102
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BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000001533 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:70293:71465:1 gene:EMLSAG00000001533 transcript:EMLSAT00000001533 description:"maker-LSalAtl2s1265-augustus-gene-0.8")

HSP 1 Score: 55.4546 bits (132), Expect = 3.085e-11
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 0 
Query:   27 TMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            + KC FCK  +  + E + +EEN    + +L++ C ++E    FL E C   +E VVKP++ + +   PTPEEAC     C
Sbjct:   22 SSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102
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BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000000723 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254:1670:-1 gene:EMLSAG00000000723 transcript:EMLSAT00000000723 description:"maker-LSalAtl2s1115-snap-gene-0.4")

HSP 1 Score: 51.2174 bits (121), Expect = 1.026e-9
Identity = 30/103 (29.13%), Postives = 53/103 (51.46%), Query Frame = 0 
Query:    1 MRVFILCA-LIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACK 102
            M++F++ A L AV SA ++  P   +K      C  +  K+N+ +  E ++D  L  L   C  V   +G   + C  F++ VVKP++E +L     P++ C+
Sbjct:    1 MKLFLIIATLFAVCSAASLPVP-VEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCR 102
[Close]
BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000011667 (pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664:924312:1 gene:EMLSAG00000011667 transcript:EMLSAT00000011667 description:"maker-LSalAtl2s80-augustus-gene-9.25")

HSP 1 Score: 44.2838 bits (103), Expect = 2.851e-7
Identity = 29/108 (26.85%), Postives = 48/108 (44.44%), Query Frame = 0 
Query:    1 MRVFILCA-LIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            M+ F++ A LI V ++ ++      EK   C  CKF+  KIN ++     VD+ +  L   C           + C  F+  VVKP++E  +     P+  C+    C
Sbjct:    1 MKFFLMFATLIVVCNSVSL---PVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
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BLAST of EMLSAG00000008834 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold541_size141817-snap-gene-0.32 (protein:Tk05607 transcript:maker-scaffold541_size141817-snap-gene-0.32-mRNA-1 annotation:"predicted protein")

HSP 1 Score: 49.6766 bits (117), Expect = 3.506e-9
Identity = 32/100 (32.00%), Postives = 56/100 (56.00%), Query Frame = 0 
Query:    4 FILCALIA--VASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEAC 101
             +L AL+A  VAS      P+  + T+ C FC +V+ +I++ + S E  D+ ++ +++IC+  E +S  + + C  FIEE     IEDL+    +P+  C
Sbjct:    5 ILLIALVASLVASGARAEHPQ-EKGTILCAFCNYVVTEIDDFLTSAETEDDVIEFVEQICNIFEGISHDIAQACKIFIEENGPIIIEDLVDNNLSPDIIC 103
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008834 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-6.936e-529.49symbol:si:rp71-40n14.1 "si:rp71-40n14.1" species:7... [more]
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BLAST of EMLSAG00000008834 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 22
Match NameE-valueIdentityDescription
gi|592857040|gb|GAXK01100504.1|2.541e-120.00TSA: Calanus finmarchicus comp6655_c0_seq1 transcr... [more]
gi|592857118|gb|GAXK01100426.1|3.195e-124.30TSA: Calanus finmarchicus comp7169_c7_seq1 transcr... [more]
gi|592768699|gb|GAXK01185869.1|3.657e-125.84TSA: Calanus finmarchicus comp44773_c0_seq1 transc... [more]
gi|592857039|gb|GAXK01100505.1|5.055e-121.28TSA: Calanus finmarchicus comp6655_c0_seq2 transcr... [more]
gi|592766462|gb|GAXK01188106.1|6.084e-121.79TSA: Calanus finmarchicus comp10792_c3_seq4 transc... [more]
gi|592857114|gb|GAXK01100430.1|6.778e-125.81TSA: Calanus finmarchicus comp7169_c9_seq2 transcr... [more]
gi|592766464|gb|GAXK01188104.1|7.338e-121.79TSA: Calanus finmarchicus comp10792_c3_seq2 transc... [more]
gi|592755013|gb|GAXK01199400.1|8.200e-128.92TSA: Calanus finmarchicus comp121505_c0_seq1 trans... [more]
gi|592786346|gb|GAXK01168222.1|1.729e+019.74TSA: Calanus finmarchicus comp883_c0_seq1 transcri... [more]
gi|592788632|gb|GAXK01165936.1|3.874e+046.43TSA: Calanus finmarchicus comp1484_c1_seq4 transcr... [more]

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BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000088341.471e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754... [more]
EMLSAP000000113203.563e-3549.53pep:novel supercontig:LSalAtl2s:LSalAtl2s780:16406... [more]
EMLSAP000000011154.679e-3451.52pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:2448... [more]
EMLSAP000000015333.085e-1135.80pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:7029... [more]
EMLSAP000000007231.026e-929.13pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254... [more]
EMLSAP000000116672.851e-726.85pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664... [more]
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BLAST of EMLSAG00000008834 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008834 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008834 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008834 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold541_size141817-snap-gene-0.323.506e-932.00protein:Tk05607 transcript:maker-scaffold541_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s54supercontigLSalAtl2s54:712754..713146 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s54-snap-gene-6.37
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008834 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008834EMLSAT00000008834-704681Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s54:712754..713146-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008834-691600 ID=EMLSAG00000008834-691600|Name=EMLSAG00000008834|organism=Lepeophtheirus salmonis|type=gene|length=393bp|location=Sequence derived from alignment at LSalAtl2s54:712754..713146- (Lepeophtheirus salmonis)
ATCATCATGAGAGTTTTTATTCTTTGTGCCTTGATTGCAGTAGCCTCTGC
TACCACCATTGGTGAGCCAAAGTTCAATGAGAAGACCATGAAGTGTGATT
TCTGTAAGTTTGTCTTGGGAAAGATTAATGAATCAGTCTTCAGTGAAGAA
AATGTTGATGAGGCTCTGCAACAGCTAGATGAAGTAAATTGATCAAGGAT
TTTCTTTATATTTAATTTATTTAATTAAATGATTTTTGCATTATAGATTT
GCGACAAAGTCGAAGAAGTATCTGGATTCCTTGGAGAAACTTGTGATAAA
TTTATTGAAGAAGTTGTGAAGCCCAAGATTGAAGATCTCCTAGCCACCAA
GCCAACTCCTGAAGAGGCATGCAAGAAATTTGAAATGTGCTAA
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