EMLSAG00000008834, EMLSAG00000008834-691600 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008834
Unique NameEMLSAG00000008834-691600
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000008834 vs. GO
Match: - (symbol:si:rp71-40n14.1 "si:rp71-40n14.1" species:7955 "Danio rerio" [GO:0006629 "lipid metabolic process" evidence=IEA] InterPro:IPR007856 Pfam:PF05184 ZFIN:ZDB-GENE-030131-7503 GO:GO:0006629 Gene3D:1.10.225.10 InterPro:IPR008138 InterPro:IPR011001 InterPro:IPR008139 Pfam:PF03489 SMART:SM00741 SUPFAM:SSF47862 PROSITE:PS50015 EMBL:BX323450 EMBL:AY184216 RefSeq:NP_997906.1 UniGene:Dr.80845 STRING:7955.ENSDARP00000064632 Ensembl:ENSDART00000064633 GeneID:335563 KEGG:dre:335563 eggNOG:NOG133695 GeneTree:ENSGT00510000050935 HOGENOM:HOG000145515 HOVERGEN:HBG066351 InParanoid:Q7T3Q1 OMA:RTICANI OrthoDB:EOG7PCJKM TreeFam:TF352354 NextBio:20810914 Uniprot:Q7T3Q1)

HSP 1 Score: 41.9726 bits (97), Expect = 6.936e-5
Identity = 23/78 (29.49%), Postives = 37/78 (47.44%), Query Frame = 0 
Query:   30 CDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            C  CK+ LGK+   + +    DE   QL ++CD++    GFL   C  F+ + +   IE+ L+T       C    +C
Sbjct:   47 CWACKWALGKVKRKISNGATQDEIKVQLSQVCDQI----GFLKSLCRGFVNKYMDVLIEE-LSTTDNARTICANISVC 119
[Close]
BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592854956|gb|GAXK01102588.1| (TSA: Calanus finmarchicus comp60716_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 5.828e+0
Identity = 16/93 (17.20%), Postives = 40/93 (43.01%), Query Frame = 0 
Query:   19 GEPKFNEKTM---KCDFCKFVLGKINESVFSEE-NVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
             +P   EK      C  C+ V+  +  ++  +   ++  ++ +  +CD + +    +  +C   +EE ++  I+ ++     P + C    MC
Sbjct:  139 SKPTLQEKVGEEPNCFLCQIVVVSVEMAIIGDNVTMEHIVESVGYVCDTLGDEDSNIVSSCHDLVEEYLETIIDMIVVQFFQPFDVCTTLNMC 417
[Close]
BLAST of EMLSAG00000008834 vs. C. finmarchicus
Match: gi|592919338|gb|GAXK01039037.1| (TSA: Calanus finmarchicus comp1178845_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.596e+0
Identity = 22/73 (30.14%), Postives = 33/73 (45.21%), Query Frame = 0 
Query:   19 GEPKFNEKTMKCDFCKFVLGKINE--SVFSEENVDEALQQLDEICDKVEEVSG---FLGETCDKFIEEVVKPK 86
            G+P  N    KC FC F+    N+  + F   +  EA + L + CD  E + G   FL +    F  ++ K K
Sbjct:  109 GQPCKNYILYKCGFCHFLTSSYNDMATHFKSNHRKEANKDL-KACDSCENIWGTTKFLAKHNRDFHAKIGKIK 324
[Close]
BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000008834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754:713146:-1 gene:EMLSAG00000008834 transcript:EMLSAT00000008834 description:"maker-LSalAtl2s54-snap-gene-6.37")

HSP 1 Score: 211.075 bits (536), Expect = 1.471e-71
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC
Sbjct:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
[Close]
BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000011320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s780:164064:164683:1 gene:EMLSAG00000011320 transcript:EMLSAT00000011320 description:"maker-LSalAtl2s780-augustus-gene-1.14")

HSP 1 Score: 118.627 bits (296), Expect = 3.563e-35
Identity = 53/107 (49.53%), Postives = 78/107 (72.90%), Query Frame = 0 
Query:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            M+  +L AL+AVASA T+ + +  EK+ KCDFCK+++   NESV + +N D A++Q++EIC + +  S FLGETC KF+ +V+KPKIE++LA+K  PE  CK  +MC
Sbjct:    1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
[Close]
BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000001115 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:244812:273376:-1 gene:EMLSAG00000001115 transcript:EMLSAT00000001115 description:"augustus_masked-LSalAtl2s1186-processed-gene-1.12")

HSP 1 Score: 122.094 bits (305), Expect = 4.679e-34
Identity = 51/99 (51.52%), Postives = 77/99 (77.78%), Query Frame = 0 
Query:    1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEE 99
            MR   L AL+AVASA T+ + +  EK++KCD CK+++ K+NESV +++N D+ +++++EIC + +EVS FLGETC +F+ +V+KPKIEDLLA K  PE+
Sbjct:    4 MRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEK 102
[Close]
BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000001533 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:70293:71465:1 gene:EMLSAG00000001533 transcript:EMLSAT00000001533 description:"maker-LSalAtl2s1265-augustus-gene-0.8")

HSP 1 Score: 55.4546 bits (132), Expect = 3.085e-11
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 0 
Query:   27 TMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            + KC FCK  +  + E + +EEN    + +L++ C ++E    FL E C   +E VVKP++ + +   PTPEEAC     C
Sbjct:   22 SSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102
[Close]
BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000000723 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254:1670:-1 gene:EMLSAG00000000723 transcript:EMLSAT00000000723 description:"maker-LSalAtl2s1115-snap-gene-0.4")

HSP 1 Score: 51.2174 bits (121), Expect = 1.026e-9
Identity = 30/103 (29.13%), Postives = 53/103 (51.46%), Query Frame = 0 
Query:    1 MRVFILCA-LIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACK 102
            M++F++ A L AV SA ++  P   +K      C  +  K+N+ +  E ++D  L  L   C  V   +G   + C  F++ VVKP++E +L     P++ C+
Sbjct:    1 MKLFLIIATLFAVCSAASLPVP-VEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCR 102
[Close]
BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Match: EMLSAP00000011667 (pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664:924312:1 gene:EMLSAG00000011667 transcript:EMLSAT00000011667 description:"maker-LSalAtl2s80-augustus-gene-9.25")

HSP 1 Score: 44.2838 bits (103), Expect = 2.851e-7
Identity = 29/108 (26.85%), Postives = 48/108 (44.44%), Query Frame = 0 
Query:    1 MRVFILCA-LIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
            M+ F++ A LI V ++ ++      EK   C  CKF+  KIN ++     VD+ +  L   C           + C  F+  VVKP++E  +     P+  C+    C
Sbjct:    1 MKFFLMFATLIVVCNSVSL---PVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
[Close]
BLAST of EMLSAG00000008834 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold541_size141817-snap-gene-0.32 (protein:Tk05607 transcript:maker-scaffold541_size141817-snap-gene-0.32-mRNA-1 annotation:"predicted protein")

HSP 1 Score: 49.6766 bits (117), Expect = 3.506e-9
Identity = 32/100 (32.00%), Postives = 56/100 (56.00%), Query Frame = 0 
Query:    4 FILCALIA--VASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEAC 101
             +L AL+A  VAS      P+  + T+ C FC +V+ +I++ + S E  D+ ++ +++IC+  E +S  + + C  FIEE     IEDL+    +P+  C
Sbjct:    5 ILLIALVASLVASGARAEHPQ-EKGTILCAFCNYVVTEIDDFLTSAETEDDVIEFVEQICNIFEGISHDIAQACKIFIEENGPIIIEDLVDNNLSPDIIC 103
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008834 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-6.936e-529.49symbol:si:rp71-40n14.1 "si:rp71-40n14.1" species:7... [more]
back to top
BLAST of EMLSAG00000008834 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 22
Match NameE-valueIdentityDescription
gi|592854956|gb|GAXK01102588.1|5.828e+017.20TSA: Calanus finmarchicus comp60716_c1_seq1 transc... [more]
gi|592919338|gb|GAXK01039037.1|7.596e+030.14TSA: Calanus finmarchicus comp1178845_c0_seq1 tran... [more]

Pages

back to top
BLAST of EMLSAG00000008834 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000088341.471e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754... [more]
EMLSAP000000113203.563e-3549.53pep:novel supercontig:LSalAtl2s:LSalAtl2s780:16406... [more]
EMLSAP000000011154.679e-3451.52pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:2448... [more]
EMLSAP000000015333.085e-1135.80pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:7029... [more]
EMLSAP000000007231.026e-929.13pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254... [more]
EMLSAP000000116672.851e-726.85pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664... [more]
back to top
BLAST of EMLSAG00000008834 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008834 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008834 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008834 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold541_size141817-snap-gene-0.323.506e-932.00protein:Tk05607 transcript:maker-scaffold541_size1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s54supercontigLSalAtl2s54:712754..713146 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s54-snap-gene-6.37
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008834 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008834EMLSAT00000008834-704681Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s54:712754..713146-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008834-691600 ID=EMLSAG00000008834-691600|Name=EMLSAG00000008834|organism=Lepeophtheirus salmonis|type=gene|length=393bp|location=Sequence derived from alignment at LSalAtl2s54:712754..713146- (Lepeophtheirus salmonis)
ATCATCATGAGAGTTTTTATTCTTTGTGCCTTGATTGCAGTAGCCTCTGC
TACCACCATTGGTGAGCCAAAGTTCAATGAGAAGACCATGAAGTGTGATT
TCTGTAAGTTTGTCTTGGGAAAGATTAATGAATCAGTCTTCAGTGAAGAA
AATGTTGATGAGGCTCTGCAACAGCTAGATGAAGTAAATTGATCAAGGAT
TTTCTTTATATTTAATTTATTTAATTAAATGATTTTTGCATTATAGATTT
GCGACAAAGTCGAAGAAGTATCTGGATTCCTTGGAGAAACTTGTGATAAA
TTTATTGAAGAAGTTGTGAAGCCCAAGATTGAAGATCTCCTAGCCACCAA
GCCAACTCCTGAAGAGGCATGCAAGAAATTTGAAATGTGCTAA
back to top
Add to Basket