EMLSAG00000009368, EMLSAG00000009368-692134 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000009368 vs. C. finmarchicus
Match: gi|592823727|gb|GAXK01130841.1| (TSA: Calanus finmarchicus comp179516_c1_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 7.403e+0 Identity = 27/106 (25.47%), Postives = 42/106 (39.62%), Query Frame = 0 Query: 13 QLSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQ------------------ESICQPDNEEKTSAYMCAGYCQVIGRQTGNCENN-VCECSRER-FYLSR 98 QLS SI S +C +GG G + GG+ C + Q E+ QP N E+ C +C + C+++ +CE R + L+R Sbjct: 85 QLSASIHSAACGWGGQAAGRALLEHTGGEGGHCHHTGYQGHGWGQVVHRGDHILCKAETESQPGNSEQKDGQHCGEHCGWFPGE*EGCDHHLLCEGGRGWDWVLAR 402
BLAST of EMLSAG00000009368 vs. C. finmarchicus
Match: gi|592954698|gb|GAXK01003855.1| (TSA: Calanus finmarchicus comp2093749_c1_seq2 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 7.564e+0 Identity = 13/37 (35.14%), Postives = 24/37 (64.86%), Query Frame = 0 Query: 14 LSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEML 50 +++S+C + +K G+CI NENGG+ +C+ +L Sbjct: 134 INKSLCLKWIIHILWKHGICI-NENGGEVPICIEPLL 241
BLAST of EMLSAG00000009368 vs. L. salmonis peptides
Match: EMLSAP00000009368 (pep:novel supercontig:LSalAtl2s:LSalAtl2s599:336881:337404:-1 gene:EMLSAG00000009368 transcript:EMLSAT00000009368 description:"snap_masked-LSalAtl2s599-processed-gene-3.11") HSP 1 Score: 308.916 bits (790), Expect = 1.164e-108 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 Query: 1 MQEESPSNHLRCQLSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQESICQPDNEEKTSAYMCAGYCQVIGRQTGNCENNVCECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCECDYGFSHDDSMSFNSTSSD 151 MQEESPSNHLRCQLSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQESICQPDNEEKTSAYMCAGYCQVIGRQTGNCENNVCECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCECDYGFSHDDSMSFNSTSSD Sbjct: 1 MQEESPSNHLRCQLSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQESICQPDNEEKTSAYMCAGYCQVIGRQTGNCENNVCECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCECDYGFSHDDSMSFNSTSSD 151
BLAST of EMLSAG00000009368 vs. L. salmonis peptides
Match: EMLSAP00000009369 (pep:novel supercontig:LSalAtl2s:LSalAtl2s599:352791:354595:-1 gene:EMLSAG00000009369 transcript:EMLSAT00000009369 description:"maker-LSalAtl2s599-snap-gene-3.41") HSP 1 Score: 109.383 bits (272), Expect = 2.436e-30 Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 0 Query: 1 MQEESPSNHLRCQLSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQESICQPDNEEKTSAYMCAGYCQVIGRQTGNCE--NNVCECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCEC 133 ++ ++ +RC L+ES+C ++C GG+ G C P+ +GG +C+C E L++ +C D + + AG+CQ GRQ+GNC+ N C C++E LS C+ +EVCS+ CQ +NG+C GPN WDC+C Sbjct: 32 LKRVKRNDLVRCGLTESVCKWTCRLGGHSGGFCSPDADGGSSCICSEEDLEKYVCGGDVGPEIAGXSXAGFCQAKGRQSGNCDLIKNECACTKEYLQLSH-IKCINDEVCSVFCQYKERKANGRCEGPNKWDCKC 165
BLAST of EMLSAG00000009368 vs. L. salmonis peptides
Match: EMLSAP00000009367 (pep:novel supercontig:LSalAtl2s:LSalAtl2s599:333271:333800:-1 gene:EMLSAG00000009367 transcript:EMLSAT00000009367 description:"augustus_masked-LSalAtl2s599-processed-gene-3.3") HSP 1 Score: 78.1814 bits (191), Expect = 9.829e-19 Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 0 Query: 6 PSNH-LRCQLSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQESICQPDNEEKTSAYMCAGYCQVIGRQTGNC--ENNVCECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPN-NWDCECDYGFSHDDSMSFNST 148 P+N + C S IC +SC FG G C+ E+G + C C Q++IC + + C +CQ IGR G C +N+ C CS R LCV +EVCS+ C+ RG S G+C+G +CEC FS +S ST Sbjct: 12 PNNRRISCDQSPIICEWSCAFGVNTGGTCLKVESGRRECFCYETNAQKTICAGYFRPENAGRACKTFCQSIGRIGGECMADNHDCICSTSRIPYFYRSLCVTDEVCSVFCKTYRGLSGGQCTGXGITKECEC---FSRRSPLSVIST 155
BLAST of EMLSAG00000009368 vs. L. salmonis peptides
Match: EMLSAP00000009525 (pep:novel supercontig:LSalAtl2s:LSalAtl2s612:448569:453649:-1 gene:EMLSAG00000009525 transcript:EMLSAT00000009525 description:"augustus_masked-LSalAtl2s612-processed-gene-4.2") HSP 1 Score: 54.299 bits (129), Expect = 1.306e-10 Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 0 Query: 7 SNHLRCQLSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQESICQPDNEEKTSAY 66 S+ +RC +SESIC ++C GG+ +G C P +GG C+C +E L + +C D + + Y Sbjct: 28 SDVVRCGISESICKWTCRIGGHSSGFCSPGPDGGSDCICSDEDLDKYLCGGDVDPDIAGY 87
BLAST of EMLSAG00000009368 vs. L. salmonis peptides
Match: EMLSAP00000003955 (pep:novel supercontig:LSalAtl2s:LSalAtl2s211:994215:1002048:1 gene:EMLSAG00000003955 transcript:EMLSAT00000003955 description:"augustus_masked-LSalAtl2s211-processed-gene-10.7") HSP 1 Score: 45.4394 bits (106), Expect = 7.530e-7 Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 0 Query: 72 CQVIGRQTGNC--ENNVCECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCEC 133 CQ +GR+ G C +N C+C E + LCV + +C + CQ +G + GKC G WDC C Sbjct: 104 CQAVGRRNGVCNSDNTDCDCDDEFVSPRQWALCVEDAICRVDCQ-RKGYARGKCEGEFGWDCNC 166
BLAST of EMLSAG00000009368 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold508_size152036-snap-gene-0.17 (protein:Tk11405 transcript:maker-scaffold508_size152036-snap-gene-0.17-mRNA-1 annotation:"hypothetical protein H257_02733") HSP 1 Score: 70.0922 bits (170), Expect = 4.356e-16 Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 0 Query: 8 NHLRCQ-LSESICSFSCLFGGYKTGLCIPNENGGKACVCVNEMLQESICQPDNEEKTSAYMCAGYCQVIGRQTGNCE--NNVCECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCEC 133 + +RC+ S C +SC G+ G C + C C E L +C + E T+ +CAG+CQ G QTG+C+ N C+C+ +R C+ E CS++CQ R S G C G N+W+C C Sbjct: 32 DRIRCRTFSGLFCRWSCRLLGHSGGSC----DADNECRCSEEDLDRYVCGGNVTETTANNLCAGWCQFRGLQTGDCDFTNGECQCTENDKLATRHIKCINEEACSIYCQFKR-KSAGFCGGTNDWECIC 155
BLAST of EMLSAG00000009368 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold365_size194585-snap-gene-0.23 (protein:Tk02274 transcript:maker-scaffold365_size194585-snap-gene-0.23-mRNA-1 annotation:"hypothetical protein PHYSODRAFT_302006") HSP 1 Score: 56.9954 bits (136), Expect = 1.098e-10 Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 0 Query: 67 MCAGYCQVIGRQTGNCENNV--CECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCEC 133 CAG C IGR+ G C + C+CS E + LC+ + +CS+ CQ G + G+C GP+NWDC C Sbjct: 150 FCAGSCHTIGRKDGKCNEDFSDCKCSDEVVTPKQYSLCLDDGICSLVCQ-RDGSARGECLGPDNWDCRC 217
BLAST of EMLSAG00000009368 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold231_size243715-snap-gene-1.45 (protein:Tk10030 transcript:maker-scaffold231_size243715-snap-gene-1.45-mRNA-1 annotation:"laminin subunit beta- partial") HSP 1 Score: 50.8322 bits (120), Expect = 1.194e-8 Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 0 Query: 67 MCAGYCQVIGRQTGNCENNV--CECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCEC 133 C C IGR TG C + CECS + + LC+ + VCS++CQ +G + G C GP W+C C Sbjct: 121 FCEASCHGIGRVTGKCSADFSDCECSPDTVAAEQYALCLDDGVCSLYCQ-RQGSARGHCKGPTGWECRC 188 The following BLAST results are available for this feature:
BLAST of EMLSAG00000009368 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000009368 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000009368 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000009368 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000009368 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000009368 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000009368 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s599:336881..337404- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000009368-692134 ID=EMLSAG00000009368-692134|Name=EMLSAG00000009368|organism=Lepeophtheirus salmonis|type=gene|length=524bp|location=Sequence derived from alignment at LSalAtl2s599:336881..337404- (Lepeophtheirus salmonis)back to top Add to Basket
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