EMLSAT00000005145, EMLSAT00000005145-700992 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005145
Unique NameEMLSAT00000005145-700992
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
T F169 UN53_5145, LsMvp1 female
  1. PreAdult2
  2. Adult
normal
no visible phenotype
30.10.2014 - 13:38
09.12.2014 (All day)
AP F364 (F168+F169) UN53_5145, UN52_5383, LsMvp1, LsMvp2/3 female
  1. PreAdult2
normal
no visible phenotype
06.03.2018 - 09:00
10.04.2018 - 09:00
AV F364 (F168+F169) UN53_5145, UN52_5383, LsMvp1, LsMvp2/3 female
  1. PreAdult2
normal
no visible phenotype
14.03.2019 - 09:00
24.04.2019 - 09:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s272supercontigLSalAtl2s272:104552..107568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005145 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005145EMLSAG00000005145-687911Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000022458EMLSAE00000022458-731386Lepeophtheirus salmonisexon
EMLSAE00000022459EMLSAE00000022459-731387Lepeophtheirus salmonisexon
EMLSAE00000022460EMLSAE00000022460-731388Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto772245auto772245Lepeophtheirus salmonispolypeptide
EMLSAP00000005145EMLSAP00000005145Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005145

>EMLSAP00000005145 ID=EMLSAP00000005145|Name=EMLSAP00000005145|organism=Lepeophtheirus salmonis|type=polypeptide|length=816bp
MDSTPSFYRIPPFFYLHVLDQTTNVTSVEIGPQTYHVKEHDIVVLPPTKM
TIIPPGYYCVVSNPVITKDDVVEKDTYGQAKLSHGDEEVRLERDPFPLYP
GEELKVKVTPLAIVHTSNALLLKVIRNFTDENDVKRVAGDLFLFEGPGTY
IPRKEVEVLKTITAQVIHENEALKLSASRETIDRSGIKHVAGEEWLIRKP
GAYLPLAYENIVEVVKAHIPLPDVAILVRAKATFKDKFGVERKNGDKYLI
TFEDTSAFIPEVQEEIIGTVDAITLDSRQYCTILNPHDSEGKAKLGHRKI
VKGEISFFLKPGEVLEDGINEVYILGEDEGIVLKSLEKFEDKLTGSSIVR
NPGDRWMIKGPMEYTPTVEVEVVDVRKAIPLHQNEGIYVRNIQTGAIRSV
IGKTYMLKEDEELWEKDLSSMVQTLLNKNRDVTADRGEWINPEKEKRAAK
EGSSSNDLDVMDMTKVITFKVPHNAAVQVYDYKSRQSRVVYGPDLVMLEP
NEEFTQLSLSGGKPKRANLIRSLALLLGPDFCSDNVTVETADHARLELKL
SYNWQFQGEKNQENGVKLFSVPDFIGDMCKSIASKVRGAVSSVSFDYLHK
NSAQIIILAVFGKNDKGQPNEVLEFKTNNLIVTSIDIRSVEPVDQRTRDS
LQKSVXLAIEITTQSQEATAKREAERVDQEARGRLERQKITDEAEAEKSR
KQLLELQAESAIVEAIGHSSADAKAXAEAAKIEADSNIENAKRKTEALAI
EAEAELNRLKEAREAEIQYIERQNKXEIEKKSELMKIEVEKFNAMNKSVL
EDPTFTILGQPSRSFS
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mRNA from alignment at LSalAtl2s272:104552..107568-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005145-700992 ID=EMLSAT00000005145-700992|Name=EMLSAT00000005145|organism=Lepeophtheirus salmonis|type=mRNA|length=3017bp|location=Sequence derived from alignment at LSalAtl2s272:104552..107568- (Lepeophtheirus salmonis)
ATGGATTCAACTCCCTCATTCTATAGGATTCCACCATTTTTTTATTTGCA CGTTCTGGATCAAACTACCAATGTCACATCAGTAGAAATAGGCCCCCAAA CATATCATGTAAAGGAACATGACATAGTTGTTCTTCCGCCTACAAAAATG ACAATTATTCCTCCTGGTTATTATTGTGTCGTATCGAATCCAGTTATTAC AAAGGATGATGTTGTTGAAAAGGATACATACGGACAAGCTAAATTGTCAC ATGGAGACGAAGAAGTGCGATTGGAGAGAGATCCGTTTCCATTATATCCA GGAGAAGAGTTAAAGGTCAAGGTCACACCATTGGCAATCGTTCATACCTC AAATGCCCTTTTATTAAAAGTTATAAGAAATTTCACGGACGAAAATGATG TTAAACGTGTGGCTGGAGATTTATTTTTGTTTGAGGGACCTGGAACTTAT ATTCCAAGGAAAGAGGTACATATAATTATAATTAATGATATAGTTTATGG CTTTAATTATCCTTATTAGGTCGAGGTTCTTAAAACCATTACAGCACAAG TTATCCATGAAAATGAAGCCCTTAAATTAAGTGCAAGTCGTGAAACCATA GATCGATCCGGAATTAAACACGTTGCAGGTGAAGAATGGCTCATAAGAAA GCCTGGAGCTTATTTGCCTTTGGCTTATGAAAATATTGTGGAAGTTGTTA AGGCACATATACCCCTTCCAGATGTCGCAATTTTGGTAAGAGCAAAGGCA ACTTTCAAGGACAAGTTTGGTGTTGAGAGAAAAAATGGAGACAAATACTT GATTACCTTTGAAGATACATCAGCATTCATTCCTGAGGTACAAGAAGAAA TAATTGGCACAGTGGATGCTATCACACTGGATAGTCGACAGTACTGCACA ATATTAAACCCACATGATTCAGAAGGGAAGGCAAAGCTTGGACATAGAAA AATTGTAAAAGGAGAAATTTCATTTTTCCTGAAACCAGGAGAAGTACTCG AGGACGGTATCAATGAGGTATACATTCTTGGAGAAGATGAAGGTATCGTT CTAAAGTCTTTGGAGAAGTTTGAAGATAAATTAACAGGCTCTTCAATCGT CAGAAATCCTGGAGATAGATGGATGATTAAAGGACCAATGGAGTATACAC CGACAGTTGAAGTAGAGGTTGTTGACGTACGAAAAGCAATACCCTTACAT CAAAACGAAGGAATTTACGTTAGAAATATTCAAACTGGTGCAATCAGATC CGTTATAGGAAAAACGTACATGCTCAAAGAGGATGAAGAGCTTTGGGAAA AAGATTTGTCATCTATGGTTCAAACTTTATTAAATAAAAATAGGGATGTC ACTGCTGATAGAGGCGAATGGATTAATCCAGAGAAGGAGAAAAGAGCTGC AAAGGAGGGTTCCAGTAGCAATGATCTCGATGTCATGGATATGACAAAAG TTATAACATTTAAAGTTCCTCATAATGCCGCTGTCCAAGTCTATGATTAT AAGAGTCGACAGTCTAGAGTTGTTTATGGACCTGATCTCGTAATGTTGGA GCCCAACGAGGAGTTTACACAACTTTCTCTTAGTGGAGGAAAACCTAAAA GGGCTAATTTAATTCGTTCCTTGGCCTTGCTCCTAGGTCCAGATTTTTGT TCAGACAATGTAACCGTTGAAACGGCAGATCATGCAAGATTAGAATTGAA ACTCTCTTATAACTGGCAATTTCAAGGAGAAAAGAATCAAGAGAACGGAG TTAAATTGTTCAGTGTTCCTGATTTTATTGGAGATATGTGCAAATCCATT GCGTCGAAAGTAAGAGGGGCCGTTTCATCCGTATCATTTGATTATCTCCA TAAAAACTCTGCACAAATAATTATTTTAGCTGTATTTGGGAAGAATGATA AAGGTCAACCAAATGAGGTCCTGGAATTTAAGACAAACAACCTTATAGTT ACCTCAATTGATATTAGAAGTGTCGAGCCTGTGGATCAGCGAACGCGTGA TTCTCTTCAAAAGTCTGTAKCCCTAGCCATAGAAATAACTACTCAGTCAC AGGAGGCTACAGCAAAGAGAGAAGCAGAAAGGGTGGACCAAGAAGCAAGA GGCAGACTAGAGCGACAAAAAATTACGGACGAGGCAGAAGCAGAAAAATC GCGCAAACAACTTTTAGAATTACAAGCAGAAAGTGCTATAGTGGAAGCAA TCGGTCATTCAAGTGCAGATGCTAAAGCTKAAGCAGAAGCAGCCAAAATT GAAGCAGACTCAAATATCGAAAATGCAAAACGTAAGACTGAAGCCTTGGC CATTGAGGCAGAAGCAGAACTGAATCGACTCAAAGAGGCCAGAGAGGCAG AGATCCAATATATTGAAAGACAGAATAAAKTAGAAATAGAGAAAAAAAGT GAGCTGATGAAGATTGAAGTGGAAAAATTTAATGCTATGGTAGAGGCTGT AGGKCCAGATACAATTCTATCTATGTCTGCKCTGCCACGAAAACACCAGA TTAAAATGTTGGAGTCCTTGGGTTTGAAATCTACTCTCATCACCGATGGA AAGACTCCTATTAATTTAATTGATGCTGCCAAGGGACTTGTGGCTGTGCA TCAACAATCATTCTGAAACTAATNCCAAATATTGATTAGTAATTTTATAT CAAATAATAGTGTCAGTATATATCAAAAGTTGCCATGACCTGGATCCAGT TACAATATATCATCTCATTGAATTTATTKACCCTTTTCTTTTATATATCA ATATATCTATCAAATAAATAAACTCGGTTTTCTATCATGAATAATGATTA ATATTTAATAAACATCCTTTAGTGGATTAAGCTGGAACGTGGGGTTATGA TTATTTTATTTAGAATAGTAGAAATGTAATTTGTGATTGATTAGGGAATG TGAAAGTAGTGGACTCATCTTTTTTTAAATCCATACTTTTTCCTCTCGTA GAACAAGTCTGTTTTGGAGGATCCCACATTCACAATTTTGGGACAGCCCT CACGATCCTTTTCCTGA
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