EMLSAT00000005145, EMLSAT00000005145-700992 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005145
Unique NameEMLSAT00000005145-700992
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
T F169 UN53_5145, LsMvp1 female
  1. PreAdult2
  2. Adult
 normal
no visible phenotype 		30.10.2014 - 13:38
09.12.2014 - 00:00
AP F364 (F168+F169) UN53_5145, UN52_5383, LsMvp1, LsMvp2/3 female
  1. PreAdult2
 normal
no visible phenotype 		06.03.2018 - 09:00
10.04.2018 - 09:00
AV F364 (F168+F169) UN53_5145, UN52_5383, LsMvp1, LsMvp2/3 female
  1. PreAdult2
 normal
no visible phenotype 		14.03.2019 - 09:00
24.04.2019 - 09:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s272supercontigLSalAtl2s272:104552..107568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005145 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005145EMLSAG00000005145-687911Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000022458EMLSAE00000022458-731386Lepeophtheirus salmonisexon
EMLSAE00000022459EMLSAE00000022459-731387Lepeophtheirus salmonisexon
EMLSAE00000022460EMLSAE00000022460-731388Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto772245auto772245Lepeophtheirus salmonispolypeptide
EMLSAP00000005145EMLSAP00000005145Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005145

>EMLSAP00000005145 ID=EMLSAP00000005145|Name=EMLSAP00000005145|organism=Lepeophtheirus salmonis|type=polypeptide|length=816bp
MDSTPSFYRIPPFFYLHVLDQTTNVTSVEIGPQTYHVKEHDIVVLPPTKM
TIIPPGYYCVVSNPVITKDDVVEKDTYGQAKLSHGDEEVRLERDPFPLYP
GEELKVKVTPLAIVHTSNALLLKVIRNFTDENDVKRVAGDLFLFEGPGTY
IPRKEVEVLKTITAQVIHENEALKLSASRETIDRSGIKHVAGEEWLIRKP
GAYLPLAYENIVEVVKAHIPLPDVAILVRAKATFKDKFGVERKNGDKYLI
TFEDTSAFIPEVQEEIIGTVDAITLDSRQYCTILNPHDSEGKAKLGHRKI
VKGEISFFLKPGEVLEDGINEVYILGEDEGIVLKSLEKFEDKLTGSSIVR
NPGDRWMIKGPMEYTPTVEVEVVDVRKAIPLHQNEGIYVRNIQTGAIRSV
IGKTYMLKEDEELWEKDLSSMVQTLLNKNRDVTADRGEWINPEKEKRAAK
EGSSSNDLDVMDMTKVITFKVPHNAAVQVYDYKSRQSRVVYGPDLVMLEP
NEEFTQLSLSGGKPKRANLIRSLALLLGPDFCSDNVTVETADHARLELKL
SYNWQFQGEKNQENGVKLFSVPDFIGDMCKSIASKVRGAVSSVSFDYLHK
NSAQIIILAVFGKNDKGQPNEVLEFKTNNLIVTSIDIRSVEPVDQRTRDS
LQKSVXLAIEITTQSQEATAKREAERVDQEARGRLERQKITDEAEAEKSR
KQLLELQAESAIVEAIGHSSADAKAXAEAAKIEADSNIENAKRKTEALAI
EAEAELNRLKEAREAEIQYIERQNKXEIEKKSELMKIEVEKFNAMNKSVL
EDPTFTILGQPSRSFS
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mRNA from alignment at LSalAtl2s272:104552..107568-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005145-700992 ID=EMLSAT00000005145-700992|Name=EMLSAT00000005145|organism=Lepeophtheirus salmonis|type=mRNA|length=3017bp|location=Sequence derived from alignment at LSalAtl2s272:104552..107568- (Lepeophtheirus salmonis)
ATGGATTCAACTCCCTCATTCTATAGGATTCCACCATTTTTTTATTTGCA
CGTTCTGGATCAAACTACCAATGTCACATCAGTAGAAATAGGCCCCCAAA
CATATCATGTAAAGGAACATGACATAGTTGTTCTTCCGCCTACAAAAATG
ACAATTATTCCTCCTGGTTATTATTGTGTCGTATCGAATCCAGTTATTAC
AAAGGATGATGTTGTTGAAAAGGATACATACGGACAAGCTAAATTGTCAC
ATGGAGACGAAGAAGTGCGATTGGAGAGAGATCCGTTTCCATTATATCCA
GGAGAAGAGTTAAAGGTCAAGGTCACACCATTGGCAATCGTTCATACCTC
AAATGCCCTTTTATTAAAAGTTATAAGAAATTTCACGGACGAAAATGATG
TTAAACGTGTGGCTGGAGATTTATTTTTGTTTGAGGGACCTGGAACTTAT
ATTCCAAGGAAAGAGGTACATATAATTATAATTAATGATATAGTTTATGG
CTTTAATTATCCTTATTAGGTCGAGGTTCTTAAAACCATTACAGCACAAG
TTATCCATGAAAATGAAGCCCTTAAATTAAGTGCAAGTCGTGAAACCATA
GATCGATCCGGAATTAAACACGTTGCAGGTGAAGAATGGCTCATAAGAAA
GCCTGGAGCTTATTTGCCTTTGGCTTATGAAAATATTGTGGAAGTTGTTA
AGGCACATATACCCCTTCCAGATGTCGCAATTTTGGTAAGAGCAAAGGCA
ACTTTCAAGGACAAGTTTGGTGTTGAGAGAAAAAATGGAGACAAATACTT
GATTACCTTTGAAGATACATCAGCATTCATTCCTGAGGTACAAGAAGAAA
TAATTGGCACAGTGGATGCTATCACACTGGATAGTCGACAGTACTGCACA
ATATTAAACCCACATGATTCAGAAGGGAAGGCAAAGCTTGGACATAGAAA
AATTGTAAAAGGAGAAATTTCATTTTTCCTGAAACCAGGAGAAGTACTCG
AGGACGGTATCAATGAGGTATACATTCTTGGAGAAGATGAAGGTATCGTT
CTAAAGTCTTTGGAGAAGTTTGAAGATAAATTAACAGGCTCTTCAATCGT
CAGAAATCCTGGAGATAGATGGATGATTAAAGGACCAATGGAGTATACAC
CGACAGTTGAAGTAGAGGTTGTTGACGTACGAAAAGCAATACCCTTACAT
CAAAACGAAGGAATTTACGTTAGAAATATTCAAACTGGTGCAATCAGATC
CGTTATAGGAAAAACGTACATGCTCAAAGAGGATGAAGAGCTTTGGGAAA
AAGATTTGTCATCTATGGTTCAAACTTTATTAAATAAAAATAGGGATGTC
ACTGCTGATAGAGGCGAATGGATTAATCCAGAGAAGGAGAAAAGAGCTGC
AAAGGAGGGTTCCAGTAGCAATGATCTCGATGTCATGGATATGACAAAAG
TTATAACATTTAAAGTTCCTCATAATGCCGCTGTCCAAGTCTATGATTAT
AAGAGTCGACAGTCTAGAGTTGTTTATGGACCTGATCTCGTAATGTTGGA
GCCCAACGAGGAGTTTACACAACTTTCTCTTAGTGGAGGAAAACCTAAAA
GGGCTAATTTAATTCGTTCCTTGGCCTTGCTCCTAGGTCCAGATTTTTGT
TCAGACAATGTAACCGTTGAAACGGCAGATCATGCAAGATTAGAATTGAA
ACTCTCTTATAACTGGCAATTTCAAGGAGAAAAGAATCAAGAGAACGGAG
TTAAATTGTTCAGTGTTCCTGATTTTATTGGAGATATGTGCAAATCCATT
GCGTCGAAAGTAAGAGGGGCCGTTTCATCCGTATCATTTGATTATCTCCA
TAAAAACTCTGCACAAATAATTATTTTAGCTGTATTTGGGAAGAATGATA
AAGGTCAACCAAATGAGGTCCTGGAATTTAAGACAAACAACCTTATAGTT
ACCTCAATTGATATTAGAAGTGTCGAGCCTGTGGATCAGCGAACGCGTGA
TTCTCTTCAAAAGTCTGTAKCCCTAGCCATAGAAATAACTACTCAGTCAC
AGGAGGCTACAGCAAAGAGAGAAGCAGAAAGGGTGGACCAAGAAGCAAGA
GGCAGACTAGAGCGACAAAAAATTACGGACGAGGCAGAAGCAGAAAAATC
GCGCAAACAACTTTTAGAATTACAAGCAGAAAGTGCTATAGTGGAAGCAA
TCGGTCATTCAAGTGCAGATGCTAAAGCTKAAGCAGAAGCAGCCAAAATT
GAAGCAGACTCAAATATCGAAAATGCAAAACGTAAGACTGAAGCCTTGGC
CATTGAGGCAGAAGCAGAACTGAATCGACTCAAAGAGGCCAGAGAGGCAG
AGATCCAATATATTGAAAGACAGAATAAAKTAGAAATAGAGAAAAAAAGT
GAGCTGATGAAGATTGAAGTGGAAAAATTTAATGCTATGGTAGAGGCTGT
AGGKCCAGATACAATTCTATCTATGTCTGCKCTGCCACGAAAACACCAGA
TTAAAATGTTGGAGTCCTTGGGTTTGAAATCTACTCTCATCACCGATGGA
AAGACTCCTATTAATTTAATTGATGCTGCCAAGGGACTTGTGGCTGTGCA
TCAACAATCATTCTGAAACTAATNCCAAATATTGATTAGTAATTTTATAT
CAAATAATAGTGTCAGTATATATCAAAAGTTGCCATGACCTGGATCCAGT
TACAATATATCATCTCATTGAATTTATTKACCCTTTTCTTTTATATATCA
ATATATCTATCAAATAAATAAACTCGGTTTTCTATCATGAATAATGATTA
ATATTTAATAAACATCCTTTAGTGGATTAAGCTGGAACGTGGGGTTATGA
TTATTTTATTTAGAATAGTAGAAATGTAATTTGTGATTGATTAGGGAATG
TGAAAGTAGTGGACTCATCTTTTTTTAAATCCATACTTTTTCCTCTCGTA
GAACAAGTCTGTTTTGGAGGATCCCACATTCACAATTTTGGGACAGCCCT
CACGATCCTTTTCCTGA
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