EMLSAT00000006305, EMLSAT00000006305-702152 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000006305
Unique NameEMLSAT00000006305-702152
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction, no eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
E F51 (Ferr_LH) ferr_LH female
  1. PreAdult2
  2. Adult
 Most lice didn’t have egg strings at termination (but had first and second which had fallen off and were found in the filter). No reproduction.
female reproduction, no eggstrings 		15.10.2012 - 00:00
26.11.2012 - 00:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAF F51 LsFer2 unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		16.06.2014 - 00:00
23.06.2014 - 00:00
NAG F51 LsFer2 unknown
  1. Nauplius I
  2. Copepodid
 no phenotype
no visible phenotype 		19.06.2014 - 00:00
27.06.2014 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s343supercontigLSalAtl2s343:28505..29920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000006305 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000006305EMLSAG00000006305-689071Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000027521EMLSAE00000027521-736449Lepeophtheirus salmonisexon
EMLSAE00000027522EMLSAE00000027522-736450Lepeophtheirus salmonisexon
EMLSAE00000027523EMLSAE00000027523-736451Lepeophtheirus salmonisexon
EMLSAE00000027524EMLSAE00000027524-736452Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto769816auto769816Lepeophtheirus salmonispolypeptide
EMLSAP00000006305EMLSAP00000006305Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000006305

>EMLSAP00000006305 ID=EMLSAP00000006305|Name=EMLSAP00000006305|organism=Lepeophtheirus salmonis|type=polypeptide|length=236bp
MSNSSGIFGGVKMIKQLLLLSILVASCVGGPDSCGAHTDVQCGNPGTKWE
SGICNSVFGGFKGNTRNLSVLINRHLNDSFKYLVMASYFDSAEVNRMGFN
KYIQGYSDKLWDNGKDILKYVLSRGGSADPNLKVTAMQMPNYQGEVLSMS
ASLDMMKQLMEDMRLVYKHAANKHVSNTQPERESYDPPLLHYLEESFFED
YTERIRDLAGKLNILGKIARNDKTKYMGFHLFDKSM
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mRNA from alignment at LSalAtl2s343:28505..29920+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000006305-702152 ID=EMLSAT00000006305-702152|Name=EMLSAT00000006305|organism=Lepeophtheirus salmonis|type=mRNA|length=1416bp|location=Sequence derived from alignment at LSalAtl2s343:28505..29920+ (Lepeophtheirus salmonis)
TTGAGACTTAATTGTTGACTTAGTAAATATATATATCGTGTGTACATACA
AAGTATAAAGATCAACAATACAAAGCATTTTTCAAGAAAGAAACAGAGAT
AACATGAAGTTGAAAATATAGATTAGGTTAAATGTCTAATTCCTCTGGGA
TCTTTGGTGGAGTTAAGATGATCAAACAATTATTGCTTTTGTCAATTTTA
GTTGCAAGCTGTGTGGGAGGACCCGACTCTTGTGGTGCTCACACTGATGT
ACAATGTGGGAATCCTGGAACAAAATGGGAATCAGGGATTTGTAACTCAG
TGTTTGGAGGATTCAAAGGAAATACTAGGAACCTCTCGGTTCTTATCAAC
AGACATTTGAATGACAGTTTCAAATATTTGGTCATGGTGAGTAAATGTAA
AATAACTGTGACTGAATCCTTTTTATTTGGGTCTTGAATTAATAAACCCC
ATTTTCACGTATTATAGGCAAGTTATTTCGATTCTGCAGAGGTAAATCGA
ATGGGATTTAACAAATATATTCAAGGATACTCTGATAAGCTATGGGATAA
TGGAAAAGACATTCTCAAGTATGTTTTAAGCCGTGGAGGATCTGCAGATC
CCAATTTGAAGGTATTTAATGCAAAAACATTTTTGAAGAAATTATTTAAG
ATGTAACGACATCGTTTTCCATTTCAATTTACAATAAGTTCAGCCATTAC
TTTTCACAATGACTGTTGTACATATAAAAGAAATTGAAAGTTTGATGTAA
ATTAAAAGGGTAAAAAAATATAAGCCGTCTAAAAGAAAATAAATTAAAGG
GATTTCCACTTTAAGATATTCTACTTATGAGCATGTGCTAATAAATATTC
TCAAGACTTTGTTTTCATTACATTTTTATAAAACCTCAAGGTTACTGCAA
TGCAAATGCCAAATTATCAGGGAGAAGTTTTATCTATGAGCGCCTCTCTT
GACATGATGAAACAATTAATGGAGGATATGCGATTGGTGTACAAGCATGC
GGCTAACAAGCATGTCTCTAATACTCAACCTGAGCGTGAAAGCTACGATC
CTCCTGTGAGTATTTTGTGTATTTCTATTCGTTATTTTTAATACTTTTTC
ATGAACAGCTACTTCACTACTTGGAAGAGAGCTTTTTTGAGGACTATACT
GAAAGAATCAGGGATCTAGCAGGGAAATTAAATATCCTTGGAAAAATTGC
CCGGAATGACAAGACCAAATACATGGGATTTCATTTATTTGATAAATCCA
TGTAAATACATATTAAGTTCATGACCTTCTCATCACTTAGACGTAGTTTG
TAACTACTTTTTACTAAAGTATATTTACTTATTATAAAATTATGTTATAT
TTAGCAAATATCACTTATTTATATTTGGAAAGACCAAAATAAATCCTTTC
TATCCGTAAATAACAT
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