Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
acetylcholinesterase maker-scaffold593_size129216-snap-gene-0.28gene
acetylcholinesterase 1maker-scaffold148_size310697-snap-gene-0.17gene
acetyl-coenzyme a synthetasemaker-scaffold2661_size13516-snap-gene-0.0gene
acetyl-coenzyme a synthetase 2- mitochondrialmaker-scaffold69_size418775-snap-gene-3.26gene
acetyl-coenzyme a transporter 1maker-scaffold222_size251774-snap-gene-0.27gene
acetylglutamate kinasesnap_masked-scaffold2_size2283618-processed-gene-1.11gene
acetyl- has propionyl- synthetase activitysnap_masked-scaffold35_size523699-processed-gene-4.49gene
acetyl- synthetasesnap_masked-scaffold10126_size2261-processed-gene-0.0gene
acetyl- synthetasesnap_masked-scaffold166_size294552-processed-gene-1.44gene
acetyl- synthetasesnap_masked-scaffold2262_size17904-processed-gene-0.4gene
acetyl- synthetasesnap_masked-scaffold6008_size4174-processed-gene-0.3gene
acetyltransferasemaker-scaffold1134_size60275-snap-gene-0.9gene
acetyltransferase domainmaker-scaffold1724_size29877-snap-gene-0.9gene
achain crystal structure of a glutaminyl cyclase from ixodes scapularismaker-scaffold77_size404793-snap-gene-2.13gene
achain crystal structure of engineered northeast structural genomics consortium targetmaker-scaffold147_size311475-snap-gene-2.16gene
achain crystal structure of engineered northeast structural genomics consortium targetmaker-scaffold462_size163801-snap-gene-0.39gene
achain crystal structure of rat otoferlin c2amaker-scaffold510_size151595-snap-gene-0.27gene
achain crystal structure of the mus81-eme1 complexmaker-scaffold706_size108852-snap-gene-0.16gene
achain crystal structure of the thrombospondin-1 type 1 repeatsmaker-scaffold412_size179788-snap-gene-0.24gene
achain human liver receptor homologue dna-binding domain (hlrh-1 dbd) in complex with dsdna from the hcyp7a1 promotersnap_masked-scaffold462_size163801-processed-gene-0.22gene
achain nmr structure of carcinoscorpius rotundicauda thioredoxin related protein 16 and its role in regulating transcription factor nf-kb activitymaker-scaffold375_size191602-snap-gene-0.38gene
achain solution structure of the matrix attachment region-binding domain of chicken mecp2snap_masked-scaffold51_size454968-processed-gene-1.4gene
achain structure of heterotrimeric g protein galpha-q beta gamma in complex with an inhibitor ym-254890snap_masked-scaffold136_size321413-processed-gene-2.4gene
achain tachylectin 5a from tachypleus tridentatus (japanese horseshoe crab)snap_masked-scaffold436_size171858-processed-gene-0.19gene
achain thyroid hormone beta dna binding domain homodimer with inverted palindrome tremaker-scaffold662_size116868-snap-gene-0.16gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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