Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
axonemal outer arm dynein intermediate chain 1maker-scaffold20_size707684-snap-gene-4.19gene
b12-dependent methionine synthasesnap_masked-scaffold312_size212576-processed-gene-1.18gene
b12-dependent methionine synthasesnap_masked-scaffold5557_size4524-processed-gene-0.0gene
b9 domain-containing protein 1 isoform x1snap_masked-scaffold369_size193746-processed-gene-0.23gene
bacterial regulatory helix-turn-helix family proteinmaker-scaffold1892_size25411-snap-gene-0.5gene
bacterioferritinmaker-scaffold280_size224562-snap-gene-0.15gene
baculoviral iap repeat-containing protein 5maker-scaffold11_size778918-snap-gene-6.55gene
bah and coiled-coil domain-containing protein 1maker-scaffold452_size166894-snap-gene-0.45gene
bai1-associated protein partialmaker-scaffold75_size407189-snap-gene-3.18gene
band 7 proteinmaker-scaffold341_size202020-snap-gene-1.14gene
band 7 protein cg42540-likemaker-scaffold21_size687808-snap-gene-4.8gene
band -like protein 5snap_masked-scaffold704_size109063-processed-gene-0.4gene
bardet-biedl syndrome 1 isoform x1maker-scaffold34_size539781-snap-gene-3.18gene
bardet-biedl syndrome 2 protein homologmaker-scaffold865_size87005-snap-gene-0.23gene
bardet-biedl syndrome 4maker-scaffold96_size378025-snap-gene-2.34gene
bardet-biedl syndrome 4 protein homologsnap_masked-scaffold96_size378025-processed-gene-2.6gene
bardet-biedl syndrome 7 protein homologmaker-scaffold180_size281610-snap-gene-0.36gene
barrier-to-autointegration factorsnap_masked-scaffold934_size79169-processed-gene-0.17gene
basement membrane-specific heparan sulfate proteoglycan coremaker-scaffold781_size98004-snap-gene-0.18gene
basement membrane-specific heparan sulfate proteoglycan core proteinmaker-scaffold48_size466083-snap-gene-1.17gene
basement membrane-specific heparan sulfate proteoglycan core proteinmaker-scaffold48_size466083-snap-gene-1.19gene
basic fibroblast growth factor receptor partialmaker-scaffold1107_size62315-snap-gene-0.10gene
basic helix-loop-helix transcription factor amossnap_masked-scaffold22_size673200-processed-gene-5.8gene
basic phospholipase a2 2maker-scaffold130_size324016-snap-gene-2.24gene
bax inhibitor 1 isoform x1maker-scaffold97_size377342-snap-gene-2.13gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads