EMLSAG00000005975, EMLSAG00000005975-688741 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000005975 vs. C. finmarchicus
Match: gi|592880591|gb|GAXK01077310.1| (TSA: Calanus finmarchicus comp4402501_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.817 bits (94), Expect = 6.612e-4 Identity = 32/124 (25.81%), Postives = 54/124 (43.55%), Query Frame = 0 Query: 21 LITEFECRNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRA-------RCKDFFAGCFDSSSLCLQSHMQKHCPKSCASC-DECEDIISPRLCEQYRGRCKTDISVI-----YACRETCGLC 131 L T C + Y NC +L S CP+ CG+C C + ++ C + C Q+ ++K+C KSC +C + + +P C Y C+ + + +C++TCG C Sbjct: 76 LTTVKPCFDKYTNCAELARDN-----CYSNGEMCPKSCGLCAGMTPHESNTCYNLWSNCNQLTGYCNQARVKKNCKKSCQACGGDANNEPAPSSCSDYWNNCRENAAYYCPRWPESCKKTCGQC 432
BLAST of EMLSAG00000005975 vs. C. finmarchicus
Match: gi|592853688|gb|GAXK01103856.1| (TSA: Calanus finmarchicus comp166349_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 9.246e-1 Identity = 15/39 (38.46%), Postives = 21/39 (53.85%), Query Frame = 0 Query: 8 LLFLLCCAYSAFGLITEFECRNSYHNCRDLVETTDRACL 46 L LLC Y+ G+ + E +N+ +N ETTD CL Sbjct: 1464 LAILLCIFYTPIGMKRKSEAQNTEYNQSHFTETTDTVCL 1580
BLAST of EMLSAG00000005975 vs. C. finmarchicus
Match: gi|592893231|gb|GAXK01065144.1| (TSA: Calanus finmarchicus comp378638_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 8.398e+0 Identity = 30/111 (27.03%), Postives = 45/111 (40.54%), Query Frame = 0 Query: 4 PYISLLF--LLCCAYSAFGLITEFECRNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRA-------RCKDFFAGCFD-SSSLCLQSHMQKHCPKSCASCDECEDIISP 104 P+IS + + A SA L T + C + ++NCR E AC +C + C +C C D F C D + +C K C K+C +C + P Sbjct: 602 PHISTITCERVAGATSAP-LTTAYPCEDKWNNCR---EEWSGACWRQEAVASCEKTCQLCPGMTPLESYTCYDEFNNCRDYAPDVCSDQENNKKCMKTCGTCPANTPVPKP 922
BLAST of EMLSAG00000005975 vs. C. finmarchicus
Match: gi|592918448|gb|GAXK01039927.1| (TSA: Calanus finmarchicus comp273721_c1_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 8.822e+0 Identity = 20/72 (27.78%), Postives = 29/72 (40.28%), Query Frame = 0 Query: 58 CGVCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCG 129 C +C+ +CKD L+SHM+KH SC+ C +L + G+ V E CG Sbjct: 541 CEICQKQCKD---------GKLLKSHMKKHSTDRPFSCETCGKTFKHKLSLKLHGKSHEGTKVKEFTCEICG 729
BLAST of EMLSAG00000005975 vs. C. finmarchicus
Match: gi|592910321|gb|GAXK01048054.1| (TSA: Calanus finmarchicus comp1254747_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 9.407e+0 Identity = 17/45 (37.78%), Postives = 24/45 (53.33%), Query Frame = 0 Query: 61 CRARCKDFFAGC---FDSSSLCLQSHMQKHCPKSCASCDECEDII 102 CRA CKDFF F L L +M++ PKS CD+ +++ Sbjct: 148 CRANCKDFFCAAWPNFRRIELVLL*NMRRDSPKSRRICDQGYEML 282
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000005975 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:19068:19805:-1 gene:EMLSAG00000005975 transcript:EMLSAT00000005975 description:"maker-LSalAtl2s322-augustus-gene-0.10") HSP 1 Score: 340.117 bits (871), Expect = 1.769e-120 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 Query: 1 MATPYISLLFLLCCAYSAFGLITEFECRNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFMKKA 166 MATPYISLLFLLCCAYSAFGLITEFECRNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFMKKA Sbjct: 1 MATPYISLLFLLCCAYSAFGLITEFECRNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFMKKA 166
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000005974 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:1175:2268:1 gene:EMLSAG00000005974 transcript:EMLSAT00000005974 description:"maker-LSalAtl2s322-augustus-gene-0.11") HSP 1 Score: 141.354 bits (355), Expect = 8.417e-43 Identity = 67/116 (57.76%), Postives = 82/116 (70.69%), Query Frame = 0 Query: 51 QWTCPEDCGVCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFMKKA 166 QW CPE CGVC+A C+D A C + S CLQ ++K CPKSCASCD+CED+I+ LC Y+ RC D SV YACR+TCGLCDD CNDA V ES+C FE+ GYC ++FM +A Sbjct: 9 QWMCPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYKHRCGEDTSVQYACRKTCGLCDDSCNDASVHESLCYKFENNGYCEKSNTMDFMNRA 124
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000006643 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3671:6789:7712:-1 gene:EMLSAG00000006643 transcript:EMLSAT00000006643 description:"maker-LSalAtl2s3671-snap-gene-0.3") HSP 1 Score: 117.087 bits (292), Expect = 1.190e-32 Identity = 59/159 (37.11%), Postives = 94/159 (59.12%), Query Frame = 0 Query: 1 MATPYISLLFLL--CCAYSAFGLITEFECRNSYHN-CRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCF-DSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCN 155 M T + +L LL C + FG+++ C ++ C + ++ +C ++Q+TCP+ CG+C A+C+D C+ DS C + + CPKSCA CDECED+IS CE + RC TD SV Y+CR+ C LC +CN+A+ +++C +++R N Sbjct: 50 METNRVLILHLLSFCLFHQCFGILSNTTCEDTDETYCHSSIGSSKESCFDAAFQYTCPKSCGICDAKCRDNNGACYRDSIEECFEPQIANECPKSCAGCDECEDLISIEFCESIKNRCSTDASVQYSCRKXCHLCKSNCNNAYYDDTVCEEYQARDMMN 208
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000003839 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2089:76:636:1 gene:EMLSAG00000003839 transcript:EMLSAT00000003839 description:"augustus_masked-LSalAtl2s2089-processed-gene-0.0") HSP 1 Score: 96.2857 bits (238), Expect = 1.160e-25 Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 0 Query: 63 ARCKDFFAGCF-DSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFMKK 165 A+C+D C+ D C H+ K CPK+CA CDECED+IS CE Y+ RC TD + Y+CR+TCGLC DCN+A+ +++C +++R C D MK+ Sbjct: 5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKE 108
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000002186 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1400:29785:30148:-1 gene:EMLSAG00000002186 transcript:EMLSAT00000002186 description:"maker-LSalAtl2s1400-augustus-gene-0.1") HSP 1 Score: 94.3597 bits (233), Expect = 2.484e-25 Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 0 Query: 54 CPEDCGVCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLC 131 CPE CGVC+A C+D A C + S CLQ ++K CPKSCASCD+CED+I+ LC Y RC+ D SV YACR+TC LC Sbjct: 2 CPEQCGVCQASCRDTGASCLEHSESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000006239 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3409:1295:2068:-1 gene:EMLSAG00000006239 transcript:EMLSAT00000006239 description:"maker-LSalAtl2s3409-augustus-gene-0.1") HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-22 Identity = 58/165 (35.15%), Postives = 81/165 (49.09%), Query Frame = 0 Query: 1 MATPYISLLFLLCCAYSAFGLITEFEC-RNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCFDS-SSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFM 163 M + Y L+ + C G++ E EC +S +C E + C P Q+TCPE CGVC CKD+ CF+ S + S++ CPK+CA CD CED+I +CE C + YACR++C C D CND + C + RG C + M Sbjct: 1 MKSKY--LVLIACFFRGINGIVLEMECLDDSKRSC----EGKENQCFEPYQQYTCPETCGVCNTTCKDYNGICFNEDSQXTINSNLLYECPKTCAKCDLCEDLIDSSICETRLSECALK-KMKYACRKSCKYCKDACNDVGSHD-FCDVHVRRGDCEKNETVKRM 157
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000010898 (pep:novel supercontig:LSalAtl2s:LSalAtl2s726:28203:28961:-1 gene:EMLSAG00000010898 transcript:EMLSAT00000010898 description:"maker-LSalAtl2s726-augustus-gene-0.7") HSP 1 Score: 87.0409 bits (214), Expect = 1.271e-21 Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 0 Query: 20 GLITEFECRNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCFDSSSLC-LQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYC 154 G ITE EC + + + + +C IPS+Q++CP+ CG+C+A+CKD+ C C + CPK+CA+CD CED+I LC + C + + YACR+TC C+D CNDA +S C S G C Sbjct: 18 GKITETECVDDSEQ---VCQRQEGSCYIPSFQFSCPQTCGICKAKCKDYNGDCALEYMQCGFNETLVSECPKTCATCDVCEDLIDTSLCVEGLSDC-LNTYMRYACRKTCLYCEDPCNDAG-NDSFCKSHVSGGTC 148
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000012209 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8853:989:1792:-1 gene:EMLSAG00000012209 transcript:EMLSAT00000012209 description:"maker-LSalAtl2s8853-snap-gene-0.3") HSP 1 Score: 84.3445 bits (207), Expect = 7.145e-21 Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 0 Query: 75 SSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFMKK 165 S C + Q CPKSC CDECED+IS CE + RC TD SV Y+CR+TC LC +CN+A+ +++C +++R C+D + MK+ Sbjct: 44 SKESCFDAAFQYTCPKSCGICDECEDLISIEFCESIKNRCNTDASVRYSCRKTCDLCKSNCNNAYYDDTVCEEYQARETCDDELRSTKMKE 134
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000010899 (pep:novel supercontig:LSalAtl2s:LSalAtl2s726:81215:81971:1 gene:EMLSAG00000010899 transcript:EMLSAT00000010899 description:"maker-LSalAtl2s726-augustus-gene-0.5") HSP 1 Score: 82.4185 bits (202), Expect = 5.899e-20 Identity = 59/160 (36.88%), Postives = 81/160 (50.62%), Query Frame = 0 Query: 9 LFLLCCAYSAF-GLITEFEC-RNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCFDSSSLC-LQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFMKK 165 L L+ C + G I+ EC +S +C+ + + C IPS Q++CP+ CGVC ARCKD+ C C CPK+CA CD CED+I +C + C T+ + YACR+TC C D CND E C I + G C + + M K Sbjct: 6 LVLMACFFQGINGKISATECVDDSEQSCK----SQESRCFIPSVQFSCPQTCGVCNARCKDYKGDCSVEEMQCGYNLTFPIECPKTCAKCDVCEDLIDTAICMESLDDC-TNAYMRYACRKTCLYCIDSCNDVG-SEDFCNIQKLSGSCENNEVVKKMCK 159
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Match: EMLSAP00000007568 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4372:5191:5850:1 gene:EMLSAG00000007568 transcript:EMLSAT00000007568 description:"maker-LSalAtl2s4372-snap-gene-0.1") HSP 1 Score: 79.7221 bits (195), Expect = 3.105e-19 Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 0 Query: 45 CLIPSYQWTCPEDCGVCRARCKDFFAGCFDSSSLC-LQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPIN 159 C S Q+ CP+ CGVC A CKD+ + C S C L ++ CPK+CA CD CED+I +CE C + + YACR++C C+D CND + +C+ RG C N Sbjct: 18 CFDSSIQFVCPQTCGVCNAICKDYNSNCLTEESXCILNNNXLDECPKTCAKCDVCEDLIDSSICETKLSECAQN-QMKYACRKSCKHCEDKCNDVGSHD-LCSEHVRRGDCEKNXN 131
BLAST of EMLSAG00000005975 vs. nr
Match: gi|225712722|gb|ACO12207.1| (ZK643.6 precursor [Lepeophtheirus salmonis]) HSP 1 Score: 101.679 bits (252), Expect = 2.235e-24 Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 0 Query: 9 LFLLCCAYSAF-GLITEFECRNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCFDSSSLC-LQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFM 163 L L+ C + GLI+ C N + + + C PS +TCPE CGVC+A CKD+ A CF+ S C + ++ CPK+CA+CDECED+I +CE + C D ++ Y CR++C C+D CND E +C SRG C + + M Sbjct: 6 LVLIACFFQGINGLISNTLC---VDNSKSVCNSLQGQCNQPSILYTCPETCGVCKAICKDYNANCFNEDSQCTINKNLSNTCPKTCATCDECEDLIDSSICENKKSDCAED-NMKYVCRKSCKYCEDTCNDVASDE-LCKSHVSRGDCGNNEAVKRM 157
BLAST of EMLSAG00000005975 vs. nr
Match: gi|290462093|gb|ADD24094.1| (protein ZK643.6 [Lepeophtheirus salmonis]) HSP 1 Score: 71.2478 bits (173), Expect = 1.489e-12 Identity = 45/151 (29.80%), Postives = 72/151 (47.68%), Query Frame = 0 Query: 17 SAFGLITEFECRNSYHNCRDLVETTDRACLIPSYQWTCPEDCGVCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCN-DPININFMKKA 166 S F ++ + ++ N + ET C+ P Y + C + CG C + C D C ++ + CL + C ++C +CD CED++ +C Q + C +V Y C TC LC+ C D +C F+ G+C+ I FMK A Sbjct: 10 SFFLVVVNGQGNSTCENEMESCETNTFKCMNPEYYFKCKKSCG-CESACTDTSIKCINNPNKCLDRDQRLECQRACGNCDRCEDLLEHIMCNQLKNLCNNG-NVRYFCPATCRLCEKSCRDNLPYNRVCHNFKKSGFCDRKSIYNRFMKSA 158 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005975 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005975 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000005975 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 25
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BLAST of EMLSAG00000005975 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005975 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005975 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 2
BLAST of EMLSAG00000005975 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s322:19068..19805- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005975-688741 ID=EMLSAG00000005975-688741|Name=EMLSAG00000005975|organism=Lepeophtheirus salmonis|type=gene|length=738bp|location=Sequence derived from alignment at LSalAtl2s322:19068..19805- (Lepeophtheirus salmonis)back to top Add to Basket
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