EMLSAG00000002406, EMLSAG00000002406-685172 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002406 vs. C. finmarchicus
Match: gi|592848676|gb|GAXK01108868.1| (TSA: Calanus finmarchicus comp296545_c0_seq1 transcribed RNA sequence) HSP 1 Score: 60.8474 bits (146), Expect = 6.809e-11 Identity = 31/65 (47.69%), Postives = 36/65 (55.38%), Query Frame = 0 Query: 54 NCLCQCIPLQYVDRKGIMHGNCTSTND-GALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTP 117 NC CQC L + D+ G + GNC S + GA WCYV S C DL S F + WSY AC TP Sbjct: 139 NCDCQCSSLNFQDKYGRIQGNCNSADHTGARWCYVDSAHHSSCQDLHHSVRFPNNPWSYEACATP 333 HSP 2 Score: 60.077 bits (144), Expect = 1.320e-10 Identity = 31/65 (47.69%), Postives = 35/65 (53.85%), Query Frame = 0 Query: 54 NCLCQCIPLQYVDRKGIMHGNCTSTND-GALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTP 117 NC CQC L + D+ G + GNC S + GA WCYV S C DL S F WSY AC TP Sbjct: 533 NCDCQCSSLTFQDKYGRIQGNCNSADHTGARWCYVDSAHHSSCQDLQHSARFPQNPWSYEACATP 727
BLAST of EMLSAG00000002406 vs. C. finmarchicus
Match: gi|592842387|gb|GAXK01115157.1| (TSA: Calanus finmarchicus comp737344_c0_seq2 transcribed RNA sequence) HSP 1 Score: 56.225 bits (134), Expect = 1.531e-9 Identity = 28/69 (40.58%), Postives = 36/69 (52.17%), Query Frame = 0 Query: 55 CLCQCIPLQYVDRKGIMHGNCTSTNDGA-LWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSS 122 C C+C L + G + GNC S++ GA WCY S CGDL S+ F D WSY AC + +S Sbjct: 226 CGCKCSNLGFRGEDGALQGNCLSSDSGAGAWCYADPSCSDRCGDLQSSNKFPDFSWSYRACQGSAQRTS 432
BLAST of EMLSAG00000002406 vs. C. finmarchicus
Match: gi|592932367|gb|GAXK01026186.1| (TSA: Calanus finmarchicus comp18158_c2_seq11 transcribed RNA sequence) HSP 1 Score: 53.9138 bits (128), Expect = 1.061e-8 Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 0 Query: 52 HRNCLCQCIPLQYVDRKGIMHGNCTSTN-DGALWCYVKYQKSSPCGDL-VKSDIFQDRYWSYHACTTPV 118 + NC CQC L + D+ G HGNC + GA WCYV ++ S C DL S F + WSY AC TP Sbjct: 247 YTNCGCQCSNLTFKDKYGNTHGNCKRVDHTGAQWCYVDPRQGS-CQDLSYTSTRFPGKPWSYEACATPA 450
BLAST of EMLSAG00000002406 vs. C. finmarchicus
Match: gi|592932369|gb|GAXK01026184.1| (TSA: Calanus finmarchicus comp18158_c2_seq9 transcribed RNA sequence) HSP 1 Score: 53.9138 bits (128), Expect = 1.283e-8 Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 0 Query: 52 HRNCLCQCIPLQYVDRKGIMHGNCTSTN-DGALWCYVKYQKSSPCGDL-VKSDIFQDRYWSYHACTTPV 118 + NC CQC L + D+ G HGNC + GA WCYV ++ S C DL S F + WSY AC TP Sbjct: 247 YTNCGCQCSNLTFKDKYGNTHGNCKRVDHTGAQWCYVDPRQGS-CQDLSYTSTRFPGKPWSYEACATPA 450
BLAST of EMLSAG00000002406 vs. C. finmarchicus
Match: gi|592956547|gb|GAXK01002009.1| (TSA: Calanus finmarchicus comp90527_c0_seq20 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 2.293e-8 Identity = 30/66 (45.45%), Postives = 36/66 (54.55%), Query Frame = 0 Query: 55 CLCQCIPLQYVDRKGIMHGNCTSTND-GALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVE 119 C CQC L + D+ G + GNC S + A WCYVK + S C DLV S WSY AC TP + Sbjct: 234 CGCQCSSLVWQDKYGDVQGNCRSADHTKAKWCYVK--EGSTCSDLVPSARHPRNPWSYQACATPSQ 425
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000002406 (pep:novel supercontig:LSalAtl2s:LSalAtl2s145:1581187:1602244:-1 gene:EMLSAG00000002406 transcript:EMLSAT00000002406 description:"maker-LSalAtl2s145-augustus-gene-16.13") HSP 1 Score: 315.079 bits (806), Expect = 4.148e-111 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 Query: 1 MPWFDTYVKKNVSEGLTVLAEDTQTKELVGIAIGTECKRKSKLYHKDSRGSHRNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVIPLFFLGAYGGSRRDSQPKDVP 150 MPWFDTYVKKNVSEGLTVLAEDTQTKELVGIAIGTECKRKSKLYHKDSRGSHRNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVIPLFFLGAYGGSRRDSQPKDVP Sbjct: 1 MPWFDTYVKKNVSEGLTVLAEDTQTKELVGIAIGTECKRKSKLYHKDSRGSHRNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVIPLFFLGAYGGSRRDSQPKDVP 150
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000000858 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1146:143094:143555:-1 gene:EMLSAG00000000858 transcript:EMLSAT00000000858 description:"maker-LSalAtl2s1146-augustus-gene-0.4") HSP 1 Score: 103.605 bits (257), Expect = 1.702e-28 Identity = 50/95 (52.63%), Postives = 57/95 (60.00%), Query Frame = 0 Query: 54 NCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVIPLFFLGAYGGSRRDSQPKD 148 +C CQCI LQ+ D KG +HGNC ST +GA WCYVKY K SPC DL +S F RYWS HAC TP EDS +CK P A+ S D Sbjct: 37 DCNCQCISLQFRDSKGKIHGNCKSTLNGAQWCYVKYDKYSPCPDLGRSQRFSGRYWSNHACATPSEDSPVCKYVFPPFVRETAFASSASSKNVAD 131
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000000311 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1046:206967:207933:1 gene:EMLSAG00000000311 transcript:EMLSAT00000000311 description:"maker-LSalAtl2s1046-augustus-gene-1.15") HSP 1 Score: 93.2041 bits (230), Expect = 2.437e-24 Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = 0 Query: 5 DTYVKKNVSEGLTVLAEDTQTKELVGIAIG-TECKRKSKLYHKDSRGSHRNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVIPL 131 + Y+ + +S G+ L L G+ +G + K + +C CQ I L + D +G +HGNC S +GA WCYVKY + SPC DL S F+ RYWS HAC TP E+S IC + P Sbjct: 14 NFYLNQIMSLGIKFLL-------LSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSMINGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATPPENSPICSSELPPF 134
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000001837 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1318:72145:72812:1 gene:EMLSAG00000001837 transcript:EMLSAT00000001837 description:"maker-LSalAtl2s1318-augustus-gene-0.12") HSP 1 Score: 90.8929 bits (224), Expect = 1.285e-23 Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 0 Query: 54 NCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVIP 130 +C CQC+ L++ D +G +GNC ST +GA WCYVKY + SPC DL S F RYWS HAC TP E+S C+ + P Sbjct: 37 DCNCQCMSLKFRDSRGTTYGNCESTINGAQWCYVKYDRFSPCPDLQSSRRFNGRYWSNHACATPAENSPECRFSTRP 113
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000001834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1318:34086:34563:-1 gene:EMLSAG00000001834 transcript:EMLSAT00000001834 description:"maker-LSalAtl2s1318-augustus-gene-0.14") HSP 1 Score: 90.5077 bits (223), Expect = 2.065e-23 Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 0 Query: 55 CLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVIPLFFLGA 136 C CQCI LQ+ D +G +GNC ST +GA WCYVKY SPC DL S F+ RYWS HA TP E+S I + P L A Sbjct: 38 CNCQCISLQFRDSRGRTYGNCRSTTNGAQWCYVKYDGFSPCPDLRVSQRFRGRYWSNHAXATPAENSPIXRSVFPPFIPLXA 119
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000000366 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1053:57010:58418:-1 gene:EMLSAG00000000366 transcript:EMLSAT00000000366 description:"snap-LSalAtl2s1053-processed-gene-0.45") HSP 1 Score: 65.0846 bits (157), Expect = 3.767e-14 Identity = 34/79 (43.04%), Postives = 43/79 (54.43%), Query Frame = 0 Query: 51 SHRNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVI 129 S +C CQCI L + D G GNC ST +GA WCYV+ S C L +S ++ +Y+S HAC T S C VI Sbjct: 29 SQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVI 107
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000001327 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1223:219743:221280:1 gene:EMLSAG00000001327 transcript:EMLSAT00000001327 description:"maker-LSalAtl2s1223-augustus-gene-2.67") HSP 1 Score: 56.9954 bits (136), Expect = 2.331e-11 Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 0 Query: 53 RNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYV--KYQKSSPCGDLVKSDIFQDRYWSYHACTTP 117 R+C CQC L + D+ ++GNC +T +G WCY+ + ++ C D S F + WSY +C TP Sbjct: 19 RDCFCQCSSLSFRDKNNRVNGNCRTTFNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATP 85
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000004889 (pep:novel supercontig:LSalAtl2s:LSalAtl2s257:179358:180381:1 gene:EMLSAG00000004889 transcript:EMLSAT00000004889 description:"maker-LSalAtl2s257-augustus-gene-1.12") HSP 1 Score: 53.9138 bits (128), Expect = 1.630e-10 Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 0 Query: 53 RNCLCQCIPLQYVDRKGIMHGNCTSTN-DGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTP 117 +NC CQC L + D G + GNC S + GA WCY+ + S C D S F+++ WSY AC TP Sbjct: 20 QNCGCQCSSLTFADSYGRIQGNCRSADYTGARWCYIPF--SHTCNDAQYSSRFRNQ-WSYEACATP 82
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000005911 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:1336906:1338922:-1 gene:EMLSAG00000005911 transcript:EMLSAT00000005911 description:"maker-LSalAtl2s31-augustus-gene-12.7") HSP 1 Score: 53.5286 bits (127), Expect = 4.740e-10 Identity = 27/93 (29.03%), Postives = 44/93 (47.31%), Query Frame = 0 Query: 28 LVGIAIGTECKRKSKLYHKDSRGSHRNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYV--KYQKSSPCGDLVKSDIFQDRYWSYHACTTPV 118 L+G+ + + + S +C CQC L + DR ++GNC +T GA WCY+ + ++ C D S + WS+ +C TP Sbjct: 12 LIGVLLSKSEAQTVLKAAAPASTSINDCFCQCSSLTFRDRNNRVNGNCRTTFQGAQWCYITDEAARNGDCPDAQPSRRQPGKQWSFFSCATPT 104
BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Match: EMLSAP00000002890 (pep:novel supercontig:LSalAtl2s:LSalAtl2s166:445712:450389:1 gene:EMLSAG00000002890 transcript:EMLSAT00000002890 description:"maker-LSalAtl2s166-augustus-gene-4.9") HSP 1 Score: 51.2174 bits (121), Expect = 2.948e-9 Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 0 Query: 52 HRNCLCQCIPLQYVDRKGIMHGNCTSTN-DGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTP 117 ++NC CQC + D KG GNC S++ G WCYV Y + C D V S + + WSY AC+TP Sbjct: 31 YQNCGCQCNSYTFSDIKGYTQGNCFSSDFTGGRWCYVDYGNT--CHDAVPSLRYNGQ-WSYEACSTP 94
BLAST of EMLSAG00000002406 vs. nr
Match: gi|155966304|gb|ABU41105.1| (hypothetical protein [Lepeophtheirus salmonis]) HSP 1 Score: 67.0106 bits (162), Expect = 1.789e-11 Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 0 Query: 51 SHRNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTPVEDSSICKDTVI 129 S +C CQCI L + D G GNC ST +GA WCYV+ S C DL +S ++ +Y+S HAC T S C VI Sbjct: 29 SQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGYSSCPDLKRSTRYRGKYYSNHACITLPAYSPECLGFVI 107
BLAST of EMLSAG00000002406 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.31 (protein:Tk01605 transcript:maker-scaffold381_size190066-snap-gene-0.31-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 60.077 bits (144), Expect = 4.274e-12 Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 0 Query: 54 NCLCQCIPLQYVDRKGIMHGNCTSTN-DGALWCYVKYQKSSPCGDLVKS-----DIFQDRYWSYHACTTPVEDSSIC 124 NC CQC P + D G + GNC S + ALWCY+ + C D+ +S + + R WSY AC+TP S IC Sbjct: 47 NCGCQCDPYTWRDTLGRVQGNCRSADATKALWCYIPASAFTSCADIRQSRNRLDNFGRPRRWSYEACSTPALTSPIC 123
BLAST of EMLSAG00000002406 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold82_size396747-snap-gene-2.41 (protein:Tk06844 transcript:maker-scaffold82_size396747-snap-gene-2.41-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 52.373 bits (124), Expect = 5.281e-9 Identity = 28/79 (35.44%), Postives = 37/79 (46.84%), Query Frame = 0 Query: 39 RKSKLYHKDSRGSHRNCLCQCIPLQYVDRKGIMHGNCTSTNDGALWCYVKYQKSSPCGDLVKSDIFQDRYWSYHACTTP 117 + + L S + C CQC + +HGNC GALWCYVK S C D ++S +WS+ AC TP Sbjct: 233 KNASLAKAQSEITQDVCDCQCNNYTF-KFDNTLHGNCLQPYKGALWCYVKDFGQSTCIDRLESSRVSGLFWSFQACGTP 310
BLAST of EMLSAG00000002406 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.30 (protein:Tk01607 transcript:maker-scaffold381_size190066-snap-gene-0.30-mRNA-1 annotation:"hypothetical protein AN3340.2") HSP 1 Score: 48.1358 bits (113), Expect = 1.018e-7 Identity = 31/79 (39.24%), Postives = 38/79 (48.10%), Query Frame = 0 Query: 55 CLCQCIPLQYVDRKGIMHGNCTSTNDG-ALWCYVKYQKSSPCGDLVKSDIFQD-----RYWSYHACTTPVEDSSICKDT 127 C CQC Y +HGNC S + A WCYV Q S C D+ S +D R WSY AC+TP S C++ Sbjct: 45 CNCQCDNYTYKGGDNQIHGNCFSADQTKAKWCYVD-QYSGECDDIQYSKNRRDSHGNLRKWSYQACSTPERASHQCRNN 122 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002406 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002406 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000002406 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 14
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BLAST of EMLSAG00000002406 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002406 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002406 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000002406 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s145:1581187..1602244- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002406-685172 ID=EMLSAG00000002406-685172|Name=EMLSAG00000002406|organism=Lepeophtheirus salmonis|type=gene|length=21058bp|location=Sequence derived from alignment at LSalAtl2s145:1581187..1602244- (Lepeophtheirus salmonis)back to top Add to Basket
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