EMLSAG00000003839, EMLSAG00000003839-686605 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003839
Unique NameEMLSAG00000003839-686605
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592789403|gb|GAXK01165165.1| (TSA: Calanus finmarchicus comp789336_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.091e+0
Identity = 20/57 (35.09%), Postives = 28/57 (49.12%), Query Frame = 0 
Query:   29 KDCPKTCAGCDEC---EDLISIEFCELYQNRCNT----DTPIRYSCRKTCGLCKSDC 78
            KDC  TC  CD C   ++    +FC  +   C+T     + +  +CRKTCG C   C
Sbjct:  791 KDCAGTCGSCDSCKCQDNHQWHQFCPYWAQYCHTPGALGSWMSSNCRKTCGKCGCPC 961
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592789404|gb|GAXK01165164.1| (TSA: Calanus finmarchicus comp789336_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.123e+0
Identity = 20/57 (35.09%), Postives = 28/57 (49.12%), Query Frame = 0 
Query:   29 KDCPKTCAGCDEC---EDLISIEFCELYQNRCNT----DTPIRYSCRKTCGLCKSDC 78
            KDC  TC  CD C   ++    +FC  +   C+T     + +  +CRKTCG C   C
Sbjct:  791 KDCAGTCGSCDSCKCQDNHQWHQFCPYWAQYCHTPGALGSWMSSNCRKTCGKCGCPC 961
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592846302|gb|GAXK01111242.1| (TSA: Calanus finmarchicus comp1592259_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.560e+0
Identity = 17/61 (27.87%), Postives = 29/61 (47.54%), Query Frame = 0 
Query:   33 KTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKA 93
            K     ++C D IS    E  Q R ++  P+ Y+  K CG+  + C++   +  V E Y+ 
Sbjct: 1583 KVEGTVEKCVDEISEAEVEYEQVRDSSHPPVMYNNPKHCGVADNSCDDHEGEGQVPEVYQG 1765
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592880591|gb|GAXK01077310.1| (TSA: Calanus finmarchicus comp4402501_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 6.783e+0
Identity = 29/95 (30.53%), Postives = 41/95 (43.16%), Query Frame = 0 
Query:   31 CPKTCAGCDECEDLISIEFCELYQNRCNTDTP------IRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCED--VFRSTKMKEMCKKTCSDC 117
            CPK+C  C       S     L+ N CN  T       ++ +C+K+C  C  D NN     + C +Y   N C +   +   +  E CKKTC  C
Sbjct:  160 CPKSCGLCAGMTPHESNTCYNLWSN-CNQLTGYCNQARVKKNCKKSCQACGGDANNEPAPSS-CSDY--WNNCRENAAYYCPRWPESCKKTCGQC 432
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592764644|gb|GAXK01189924.1| (TSA: Calanus finmarchicus comp263120_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.735e+0
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 0 
Query:   16 RDGVEECFLPHIAKDCPKTCAGCD 39
            R+GV+E   P +A  C  TC GCD
Sbjct:  978 REGVKELLFPPVACRCFSTCGGCD 1049
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592764645|gb|GAXK01189923.1| (TSA: Calanus finmarchicus comp263120_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.738e+0
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 0 
Query:   16 RDGVEECFLPHIAKDCPKTCAGCD 39
            R+GV+E   P +A  C  TC GCD
Sbjct:  978 REGVKELLFPPVACRCFSTCGGCD 1049
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592764646|gb|GAXK01189922.1| (TSA: Calanus finmarchicus comp263120_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.802e+0
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 0 
Query:   16 RDGVEECFLPHIAKDCPKTCAGCD 39
            R+GV+E   P +A  C  TC GCD
Sbjct: 2407 REGVKELLFPPVACRCFSTCGGCD 2478
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592764647|gb|GAXK01189921.1| (TSA: Calanus finmarchicus comp263120_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.804e+0
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 0 
Query:   16 RDGVEECFLPHIAKDCPKTCAGCD 39
            R+GV+E   P +A  C  TC GCD
Sbjct: 2407 REGVKELLFPPVACRCFSTCGGCD 2478
[Close]
BLAST of EMLSAG00000003839 vs. C. finmarchicus
Match: gi|592800476|gb|GAXK01154092.1| (TSA: Calanus finmarchicus comp1386071_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.970e+0
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 0 
Query:   88 CEEYKARNTCEDVFRSTKMKEMCKKTCSDC 117
            C++Y A   C D F    MKE C KTC+ C
Sbjct:  963 CKDYAAEGLCTDDFMEEDMKENCPKTCNLC 1052
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000003839 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2089:76:636:1 gene:EMLSAG00000003839 transcript:EMLSAT00000003839 description:"augustus_masked-LSalAtl2s2089-processed-gene-0.0")

HSP 1 Score: 237.654 bits (605), Expect = 1.166e-81
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 
Query:    1 SVHLAKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEMCKKTCSDCE 118
            SVHLAKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEMCKKTCSDCE
Sbjct:    1 SVHLAKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEMCKKTCSDCE 118
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000006643 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3671:6789:7712:-1 gene:EMLSAG00000006643 transcript:EMLSAT00000006643 description:"maker-LSalAtl2s3671-snap-gene-0.3")

HSP 1 Score: 150.984 bits (380), Expect = 2.318e-46
Identity = 71/96 (73.96%), Postives = 81/96 (84.38%), Query Frame = 0 
Query:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDV 100
            AKCRDNNGACYRD +EECF P IA +CPK+CAGCDECEDLISIEFCE  +NRC+TD  ++YSCRK C LCKS+CNNAYYDD VCEEY+AR+    V
Sbjct:  115 AKCRDNNGACYRDSIEECFEPQIANECPKSCAGCDECEDLISIEFCESIKNRCSTDASVQYSCRKXCHLCKSNCNNAYYDDTVCEEYQARDMMNFV 210
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000012209 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8853:989:1792:-1 gene:EMLSAG00000012209 transcript:EMLSAT00000012209 description:"maker-LSalAtl2s8853-snap-gene-0.3")

HSP 1 Score: 140.584 bits (353), Expect = 3.527e-43
Identity = 70/96 (72.92%), Postives = 77/96 (80.21%), Query Frame = 0 
Query:   20 EECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEMCKKTCS 115
            E CF       CPK+C  CDECEDLISIEFCE  +NRCNTD  +RYSCRKTC LCKS+CNNAYYDD VCEEY+AR TC+D  RSTKMKEMCKKTC+
Sbjct:   46 ESCFDAAFQYTCPKSCGICDECEDLISIEFCESIKNRCNTDASVRYSCRKTCDLCKSNCNNAYYDDTVCEEYQARETCDDELRSTKMKEMCKKTCN 141
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000003375 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1851:16797:17679:1 gene:EMLSAG00000003375 transcript:EMLSAT00000003375 description:"maker-LSalAtl2s1851-augustus-gene-0.4")

HSP 1 Score: 113.62 bits (283), Expect = 1.184e-32
Identity = 62/114 (54.39%), Postives = 71/114 (62.28%), Query Frame = 0 
Query:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEMCKKTCSDCE 118
            AKCRD+NGACYRD +EECF P IA +CPK+CAGCDE                                   S+CNNAYYDD VCEEY+AR+TC+D  RSTKMKEMCKKTC+ CE
Sbjct:   66 AKCRDSNGACYRDSIEECFEPQIANECPKSCAGCDE-----------------------------------SNCNNAYYDDTVCEEYQARDTCDDELRSTKMKEMCKKTCNGCE 144
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000005292 (pep:novel supercontig:LSalAtl2s:LSalAtl2s282:38031:38884:1 gene:EMLSAG00000005292 transcript:EMLSAT00000005292 description:"maker-LSalAtl2s282-augustus-gene-0.13")

HSP 1 Score: 100.523 bits (249), Expect = 9.786e-28
Identity = 55/105 (52.38%), Postives = 63/105 (60.00%), Query Frame = 0 
Query:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEM 109
            AKCRDNNGACYRDGV+ECFLPHIAK+CPK+CA CD+                                   S+CNN +Y DAVCEEYK R+  +DV RSTKMKEM
Sbjct:   66 AKCRDNNGACYRDGVDECFLPHIAKECPKSCAECDD-----------------------------------SNCNNPFYKDAVCEEYKVRSNYDDVLRSTKMKEM 135
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000005975 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:19068:19805:-1 gene:EMLSAG00000005975 transcript:EMLSAT00000005975 description:"maker-LSalAtl2s322-augustus-gene-0.10")

HSP 1 Score: 96.2857 bits (238), Expect = 8.243e-26
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 0 
Query:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKE 108
            A+C+D    C+ D    C   H+ K CPK+CA CDECED+IS   CE Y+ RC TD  + Y+CR+TCGLC  DCN+A+  +++C  +++R  C D      MK+
Sbjct:   63 ARCKDFFAGCF-DSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCNDPININFMKK 165
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000005974 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:1175:2268:1 gene:EMLSAG00000005974 transcript:EMLSAT00000005974 description:"maker-LSalAtl2s322-augustus-gene-0.11")

HSP 1 Score: 91.6633 bits (226), Expect = 2.257e-24
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 0 
Query:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEMCKKTCSDC 117
            A CRD   +C     E C    I K CPK+CA CD+CEDLI+ + C  Y++RC  DT ++Y+CRKTCGLC   CN+A   +++C +++    CE       M   C++TC  C
Sbjct:   21 ASCRDTGASCLEHS-ESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYKHRCGEDTSVQYACRKTCGLCDDSCNDASVHESLCYKFENNGYCEKSNTMDFMNRACRRTCGFC 132
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000002186 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1400:29785:30148:-1 gene:EMLSAG00000002186 transcript:EMLSAT00000002186 description:"maker-LSalAtl2s1400-augustus-gene-0.1")

HSP 1 Score: 70.8626 bits (172), Expect = 4.937e-17
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0 
Query:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLC 74
            A CRD   +C     E C    I K CPK+CA CD+CEDLI+ + C  Y +RC  DT ++Y+CRKTC LC
Sbjct:   11 ASCRDTGASCLEHS-ESCLQKSIEKQCPKSCASCDDCEDLINSDLCSGYTHRCEEDTSVQYACRKTCELC 79
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000010892 (pep:novel supercontig:LSalAtl2s:LSalAtl2s726:17362:18120:-1 gene:EMLSAG00000010892 transcript:EMLSAT00000010892 description:"maker-LSalAtl2s726-augustus-gene-0.6")

HSP 1 Score: 70.8626 bits (172), Expect = 2.533e-16
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 0 
Query:    1 SVHLAKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCE--DVFRSTKMKEMCKKTCSDCE 118
            SV  A+C+D N  CY++  +      I+ +CPKTCA CD CEDLI    C+     C+ +  +RY+CRKTC  C   CNN   DD  C+ +     CE  DVF     K+MC+K+C+ CE
Sbjct:   54 SVCEAQCKDYNDNCYQENFQCGNNVTISNECPKTCATCDVCEDLIDTSICQTSLKDCHNNY-MRYACRKTCLYCLDPCNNVGNDD-FCKLHTTNRICEKNDVF-----KKMCRKSCNFCE 166
[Close]
BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Match: EMLSAP00000010898 (pep:novel supercontig:LSalAtl2s:LSalAtl2s726:28203:28961:-1 gene:EMLSAG00000010898 transcript:EMLSAT00000010898 description:"maker-LSalAtl2s726-augustus-gene-0.7")

HSP 1 Score: 68.1662 bits (165), Expect = 2.838e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 0 
Query:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEMCKKTCSDCE 118
            AKC+D NG C  + ++  F   +  +CPKTCA CD CEDLI    C    + C  +T +RY+CRKTC  C+  CN+A  +D+ C+ + +  TC     +   + MCK++C  C+
Sbjct:   58 AKCKDYNGDCALEYMQCGFNETLVSECPKTCATCDVCEDLIDTSLCVEGLSDC-LNTYMRYACRKTCLYCEDPCNDA-GNDSFCKSHVSGGTCTS---NAAARRMCKESCRICD 166
[Close]
BLAST of EMLSAG00000003839 vs. nr
Match: gi|225712722|gb|ACO12207.1| (ZK643.6 precursor [Lepeophtheirus salmonis])

HSP 1 Score: 66.6254 bits (161), Expect = 1.780e-11
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 0 
Query:    5 AKCRDNNGACYRDGVEECFLPHIAKDCPKTCAGCDECEDLISIEFCELYQNRCNTDTPIRYSCRKTCGLCKSDCNNAYYDDAVCEEYKARNTCEDVFRSTKMKEMCKKTCSDC 117
            A C+D N  C+ +  +     +++  CPKTCA CDECEDLI    CE  ++ C  D  ++Y CRK+C  C+  CN+   D+ +C+ + +R  C +   +  +K MCKK+C  C
Sbjct:   58 AICKDYNANCFNEDSQCTINKNLSNTCPKTCATCDECEDLIDSSICENKKSDCAEDN-MKYVCRKSCKYCEDTCNDVASDE-LCKSHVSRGDCGN---NEAVKRMCKKSCELC 165
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003839 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003839 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592789403|gb|GAXK01165165.1|1.091e+035.09TSA: Calanus finmarchicus comp789336_c0_seq2 trans... [more]
gi|592789404|gb|GAXK01165164.1|1.123e+035.09TSA: Calanus finmarchicus comp789336_c0_seq1 trans... [more]
gi|592846302|gb|GAXK01111242.1|3.560e+027.87TSA: Calanus finmarchicus comp1592259_c0_seq1 tran... [more]
gi|592880591|gb|GAXK01077310.1|6.783e+030.53TSA: Calanus finmarchicus comp4402501_c0_seq1 tran... [more]
gi|592764644|gb|GAXK01189924.1|9.735e+050.00TSA: Calanus finmarchicus comp263120_c0_seq4 trans... [more]
gi|592764645|gb|GAXK01189923.1|9.738e+050.00TSA: Calanus finmarchicus comp263120_c0_seq3 trans... [more]
gi|592764646|gb|GAXK01189922.1|9.802e+050.00TSA: Calanus finmarchicus comp263120_c0_seq2 trans... [more]
gi|592764647|gb|GAXK01189921.1|9.804e+050.00TSA: Calanus finmarchicus comp263120_c0_seq1 trans... [more]
gi|592800476|gb|GAXK01154092.1|9.970e+046.67TSA: Calanus finmarchicus comp1386071_c0_seq2 tran... [more]
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BLAST of EMLSAG00000003839 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 21
Match NameE-valueIdentityDescription
EMLSAP000000038391.166e-81100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2089:76:6... [more]
EMLSAP000000066432.318e-4673.96pep:novel supercontig:LSalAtl2s:LSalAtl2s3671:6789... [more]
EMLSAP000000122093.527e-4372.92pep:novel supercontig:LSalAtl2s:LSalAtl2s8853:989:... [more]
EMLSAP000000033751.184e-3254.39pep:novel supercontig:LSalAtl2s:LSalAtl2s1851:1679... [more]
EMLSAP000000052929.786e-2852.38pep:novel supercontig:LSalAtl2s:LSalAtl2s282:38031... [more]
EMLSAP000000059758.243e-2644.23pep:novel supercontig:LSalAtl2s:LSalAtl2s322:19068... [more]
EMLSAP000000059742.257e-2441.59pep:novel supercontig:LSalAtl2s:LSalAtl2s322:1175:... [more]
EMLSAP000000021864.937e-1750.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1400:2978... [more]
EMLSAP000000108922.533e-1641.67pep:novel supercontig:LSalAtl2s:LSalAtl2s726:17362... [more]
EMLSAP000000108982.838e-1538.60pep:novel supercontig:LSalAtl2s:LSalAtl2s726:28203... [more]

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BLAST of EMLSAG00000003839 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003839 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003839 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|225712722|gb|ACO12207.1|1.780e-1137.17ZK643.6 precursor [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000003839 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2089supercontigLSalAtl2s2089:76..636 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s2089-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteZK643.6 precursor [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003839 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003839EMLSAT00000003839-699686Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2089:76..636+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003839-686605 ID=EMLSAG00000003839-686605|Name=EMLSAG00000003839|organism=Lepeophtheirus salmonis|type=gene|length=561bp|location=Sequence derived from alignment at LSalAtl2s2089:76..636+ (Lepeophtheirus salmonis)
TCCGTTCACTTAGCTAAATGTAGAGACAATAACGGTGCTTGCTATAGAGA
TGGTGTAGAGGAATGCTTTCTACCCCATATTGCAAAGGATTGTCCAAAAA
CGTGTGCCGGATGTGACGGTTAGTATCAAAGTTGTTCCTTTATAATACAG
TAACCAATTAAATGATCTTGTAAATAGAATGCGAGGACCTGATTTCTATT
GAATTTTGTGAACTGTATCAAAATCGATGCAACACGGATACTCCAATTCG
ATATTCTTGTCGAAAAACCTGCGGCTTATGCAGTAAGCTTATTACTTATT
ACTATCTTACCACATAACGCAGCCTTTTTAAATTTAGAGAGTGATTGTAA
TAATGCATATTATGACGATGCAGTTTGTGAAGAATACAAAGCTAGAAACA
CCTGTGAGGATGTATTTCGTTCAACAAAAATGAAAGAAATGTGCAAGAAA
ACCTGTAGTGATTGTGAATAAATACAAAACAAAATTGTTCTACTGAAAAT
AAAAAATAAAAAAAAATTGCAATTGTATCATTTCTTTTTTATTTTTAAAA
ATGAATTATAT
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