EMLSAT00000001458, EMLSAT00000001458-697305 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000001458
Unique NameEMLSAT00000001458-697305
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction, no eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AP F366 EMLSAT00000001458 EMLSAG00000001458 female
  1. PreAdult2
 no eggstreng
female reproduction, no eggstrings 		06.03.2018 - 09:00
10.04.2018 - 09:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: survival, reduced
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
EMLSAT00000001458 cop + infection RAB1A both
  1. Nauplius1
  2. Copepodid
 no lice survived to the end of experiment, where control lice were mainly chalimus 2
survival, reduced 		09.05.2018 - 09:00
01.06.2018 - 10:00
EMLSAT00000001458 cop + infection_b RAB1A both
  1. Nauplius1
  2. Copepodid
 no lice survived to the end of experiment, where control lice were mainly chalimus 2
survival, reduced 		18.06.2018 - 14:00
27.06.2018 - 10:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1248supercontigLSalAtl2s1248:131241..136261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000001458 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000001458EMLSAG00000001458-684224Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000006343EMLSAE00000006343-715271Lepeophtheirus salmonisexon
EMLSAE00000006344EMLSAE00000006344-715272Lepeophtheirus salmonisexon
EMLSAE00000006345EMLSAE00000006345-715273Lepeophtheirus salmonisexon
EMLSAE00000006346EMLSAE00000006346-715274Lepeophtheirus salmonisexon
EMLSAE00000006347EMLSAE00000006347-715275Lepeophtheirus salmonisexon
EMLSAE00000006348EMLSAE00000006348-715276Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto772914auto772914Lepeophtheirus salmonispolypeptide
EMLSAP00000001458EMLSAP00000001458Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000001458

>EMLSAP00000001458 ID=EMLSAP00000001458|Name=EMLSAP00000001458|organism=Lepeophtheirus salmonis|type=polypeptide|length=201bp
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI
ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNLK
QWLQEIDRYACENVNKLLVGNKCDLTTKKVVDYTTAKEYADQLNMPFLEA
SAKNATNVEQAFMTMAAEIKNRVGPPAPSGPSGQVKIDSTPVSSKSGTGC
C
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mRNA from alignment at LSalAtl2s1248:131241..136261+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000001458-697305 ID=EMLSAT00000001458-697305|Name=EMLSAT00000001458|organism=Lepeophtheirus salmonis|type=mRNA|length=5021bp|location=Sequence derived from alignment at LSalAtl2s1248:131241..136261+ (Lepeophtheirus salmonis)
AACCTAACAATCAACGAATGAAAAGGGAGAGTTAAAAAATGATAAAAAGT
AAGGTAGAAAAAGAGCTCTATTCTGGGACCTTTAGTTAAGTAGTATAGGA
AGGGGAGGCAAATTCTTATTCGTCACCCACTGTAGTGGAGAAAAAGAAAG
AAAAAGAGAGAGAAAGAGAAAGAAAGAAGGAGAAGGAAGACTGATCAAAG
AAATAAGGGAAAAATCTGTCAAAAGTTCTTCAGGGATACATATTTGGTTG
GATTTCGTACTTTTCTTCGTAGTTGTGTAAAGATTGATATAGACCATGAA
TCCAGAATAGTGAGTAAACTTATTGGATAAAGCGTATTTTTTGTGTAGGA
GGAGGCCCATAAACCTTCRCCATCCTCTTGTCTCATGATCCCATCCGATC
CTGTCCCATTTGTACATTATGAGGTATCCAGTTGAAGAATCCCTTTTTGC
ACTACTTTCGAATCTTGACCAGTTTTTCTAATTTTATTTCCTACTTAGCC
ATGAGATGGGAGTCGATGTTACTAGGAAGGACCTTGTCTTGATTCACTGC
AGTTGAGATCCATTTCGTATGTCGTATTGAAAAGGCATTTCTATTCCGTG
AAATAGGAGCTCTAAAGATTCTAAATATCTTCTCTCTTTTCAATGTACAT
TGTTCGTCAGTACAAAAGCAAGCTAGTATGAGTTTACTCAAAAAATAAGA
TTAGAATACCATTGTATTCTTATACGGATTATCTCAATTTCCTTCGACAA
ATTAATCTTATTCAGCTTTTGAAGGGCCTACAAATTGCACTAATTTCGTA
ATTTGCATTATACMAAGTTAATCGTCATAATAATAAAAAAAATGGATAGA
TTTTATTCGAAAAGCCATGTCATGGTCAAATTAAGTTTCATAAATCAAAT
AAACGTTCTAAACTATAGCTATTGTTCTTCAGTATCCTAACACACCCCAC
AACTTTGAATACAAAGCCTATAATTGCCTCAAATAGGGGGTGTTGACAAT
AAATGAAGTAAAAAAAATAATCTGGAATTTTTCCTCTTTTTGATTGTTTT
ATGTTCATACAGCACATATTTATATTAATATACGTAAATGTACCATCTTC
CAGAAATAAATCTGTTTTAATACTTATTGTATCCATGAAGGGAATATCCT
AAGAGGTTTGAATAATTAGTTAAATCTAACATTGAACAATTTTATATTAA
GCTTATGCTCTCTCCATTGAGATAAATTCATTAAAATTCAATTTTCATGT
ATTTTTTTTTCTGACATAAAATTCTTAATTTATCATTTCTAATGGTTAAT
AGCTGTAAATTAATGTAAATATTAGTGAAAAGTAATGCTGGATATTAATG
GGTATTTGTCTATTGTAATTTAAATTTATCTTTTCAGCGATTATTTATTC
AAGCTGTTATTGATTGGCGATTCTGGTGTAGGCAAATCGTGCTTACTATT
AAGATTTGCTGATGATACTTACACAGAAAGTTACATAAGTACAATTGGTG
TTGACTTTAAGATTAGAACAATTGAACTCGACGGAAAGACTATCAAGTTG
CAAATCTGGGATACTGCAGGCCAAGAAAGATTCAGAACTATCACATCCAG
GTATTTTTCATTACTTTATATTATCATATATATTTTTAAATCATTTTGGA
AGTTATACTTTAAATATTCACTTTTCAATTTGATACTTTTTTTTTAAATG
AATAAAGTTACTATCGTGGTGCCCACGGAATCATCGTTGTATATGACGTT
ACGGACCAGGATTCTTTTAATAACCTTAAGCAATGGCTTCAAGAAATTGA
TAGATACGCATGTGAAAATGTAAACAAGCTTCTTGTGGGAAACAAATGTG
ATCTGACAACAAAGAAGGTTGTAGATTATACAACTGCAAAAGTAAGTTTC
GTCTGTGTATACATATATATTTCATTAAATTGTTTTTTGGAGTACCGAAT
GTTTATTAGGAATTATTAATGTAGGATTTGATTTTTATCGTCATTGTTAC
ATTTGAGATAAATAGTGGTACACCACATTAAATGGACTTAATTACTTTGA
ATAATATATTGTATTTGTTAAAAGGAATACGCTGATCAGTTAAATATGCC
GTTTTTGGAAGCCTCTGCTAAAAATGCAACCAACGTAGAGCAAGCTTTTA
TGACTATGGCAGCGGAAATTAAAAACAGAGTTGGACCTCCTGCTCCCTCT
GGACCATCAGGACAAGTCAAGATTGATTCGACCCCTGTTTCATCCAAATC
AGGGACTGGATGTTGCTAAGAATCTAAGTCGTCTCGTTACATACCTTTCT
CTAATCCTATATTCCATTTTTTTTAAAATCATCTATTAAGTTTGTTTACA
GTCATCAGGTATTATGGAAATATGTAATAGAATAATTGATCTTATTTTTT
ATGAAATATATTTTACAGCGATGTTTGCAACATTTCGATTGAGATTTGAT
CTTGAATATAACATTTTTACCAGGATTAAAGGTCATCATCATTATATGTA
ATTACGAACCACATCTTCAAATTGCCTCTGTTTTTAGCTGACATCTTTAT
ACTTCGTCTTAATTAGTCTGAATTTCATTATCTAGTTGAAGAACAGAAGG
AGCAAAATAAACTTGTCTAGAAATCATTGTCTATTATGTTTTGATTATTA
TTATTTCTTCTGAGTAAGTTTTTGTTCATATAATTAGATTAGGTTTAATT
TTATAGATCGTTTTAATTATTAAAAAGTGTTATATTGATCCAATGTTTCT
TTTAAATTTTTTTTTTGGTTCATTCGTTTTACGATTATATAATATATTAT
TAATTAGGAAGCAATCTAAAAAATTGCACCCTTCCTTGGATAATGCTGTG
TATTGATCAGCCCTTCTCATTTGATTGTGTCTCCTTTAATATATTTGTAT
TAATAAACAATAATACAGAAAAGGTATTTTAATTGCTAAAAGCTTAATTT
TTGGATGCAGACGTTTAACCAACATGAATTAAATAATTATTAAGTTATGT
AATGCCAACGTGTAATTATTTTTTTCTCTTTTATTCCATTCCATTAAAAT
TTGTAAATAAATGATTTTTACATGAAACAGTTCTTTATTCCTTTGTGGTT
TCTAAATTTTTTCAATTGGTGGTTTTTTAATAAAATTAAAATATTAAATT
ATAAAGAGAATCTATTACTGTAAGAGGGAAAATTCGATATTTTCTCATAA
CGCACCTCTATTTTATGAGCTATATACTCAAAAATAAAATGCATACTTTT
AGACACTTATTATATTGAGATCATGTCATCAGTAAGCAGCTAAATATATT
TTACTTGCTTCTCTATCCAAAATAAGAGTCTAAGCTTAATTAGTTTTTGA
TAATAAGAAAAGCCATGTGAAAATAATAAAAATGTCAACAAATTTTGGTT
GAAATGAAGAATAAATTAAGCCGATCACTAATTAATTGGTCAAATATATG
AATCTAGAGTTATACGCTTGTATCCCAAAGAGCAAGTATTTTATTGAGGA
TATGATTGGATAAAGTTGATCATCCTGAAGAAAGCATTGCCATCCATGTA
GTATGTAAAATGATAAATGAATATCCAAATATGTCAACTTATATTTTTTT
GAGCGTAGAACTCAACATAAAGTTAAGATCAACCCGTTTAATTCTTAATC
GTAATCTAAGAACGCGTTAAGTCATGTGATTACATTTATTTGTTCATAAA
AAAATATTTATTTTGATGCTTTGTCAGGTACTGTTTCGGCCATTGTACAT
ATTAATCTATCTCTTTTAGTAACAAATCCTAAAGCTTCTTCTGGTAATTT
GGAAGGGTCGTCTACGATGCTTGTCTTGGCGCATAGTTTGGCCAATTTTC
TATACGCATCTGAAAAATAAGTATATAATAATAAGTCTTGGCTATTTATC
TAAAAATTAAGACTTTTTCCAAATATTATATCCATATACAAATAGAAAAC
GAATTATTTTAATAAAATTTTACCTTTTCGTAATTGGTGGAGGGACATAT
TCTTAGAAATCCACATTGAGCTTTTTTTTCTTAATATGTCAATCGATGAG
GCATCAACTTCCCTATCAAAACTATGAACAAAATGTCCCATTATATTAGT
AAAGACCCAATATCTCCAGTCTTCAATAGTTTTTTCAACCACATGATCGT
GGAATCGGTCTGCTAAACTTCGAGAAGCAAGGACTTTTGGAACTAAAACC
ACTCCATTATCTGGTAACTCGCTCTGGAAATGCCTAAAAAATATGAATAT
CAAGAAATATTTATGTAAACATATGATAGATCAATCTTTAGAACAATTCG
TTTTTACTATAAAAAAAGTGTATAGTTACTCAATTTCTCGATTTAATTTT
TCAATTTCTTCTTTAAGGGAACATATGTGGTCCGTTGTTTTGTTGTTGAA
TGCTTGARTATCCTTAATGAATTTACCAGCCTCATATAATATGCTGGCTT
GACTTATCTATTCAAATAAACGCATATTTAGTACTGAGTTCCTACTGTAA
CAAATGTTAATAAAATTAAATAACTTAAAAATGAGGTTATCATTTATTTA
AAATTAAGTATTCCTCATTTCCATGGTGAAGTTACAGTTTCAAAAAGCTA
TTAGAATGTTTCTTTAACCTTTTCCTCTTCGGGTGATCCAAGATGTGGTA
ATACTCTTTGCAATTCATCTAAGCCTTGCTTAATAGAGTCTCTCCTTCTA
TTTTCAGTAGATGAATGGGATCCGGATATAGAGTTTGGTAAAGGTATACA
CTTTTTTCGAAAGCGCTTTTCCTCTGATGTATATATTTCAAGTTCTTCAA
TTGGTTCAACGACATCACTGGTAGTKCCGCCATTAGATTTACTTCGTCGA
GAGCGTTTGTTTGTTTTAACTGTTCGAGCATCATCATTTTCTTGTGGTTT
TTCTTGTTTTTGACTATTGTTTTGGTCAACCTAATTAGAATAATTAGGTT
ACAAGCAACAAATAAAAGGCATGAAGTATAATGTAGGTCTTATTGGGTTA
TCGATACAGCGAGAACGTTAG
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