EMLSAT00000005299, EMLSAT00000005299-701146 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000005299
Unique Name	EMLSAT00000005299-701146
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	F367 EMLSAT00000005299 nauplia	EMLSAT00000005299	both Nauplius1	-Missing- -Missing-	10.02.2018 - 13:00 19.02.2018 - 14:00

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: reproduction, female reproduction, shorter eggstrings
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	AP F367 EMLSAG00000005299	EMLSAG00000005299	female PreAdult2	slightly shorter gonade and abdominal segment reproduction, female reproduction, shorter eggstrings	06.03.2018 - 09:00 10.04.2018 - 09:00

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	EMLSAT00000005299 cop + infection	Emc3	both Nauplius1 chalimus and preadult	no proper visible phenotype but maybe quicker development than control no visible phenotype	09.05.2018 - 09:00 01.06.2018 - 10:00

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s282	supercontig	LSalAtl2s282:475306..478588 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000005299 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000005299	EMLSAG00000005299-688065	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000023155	EMLSAE00000023155-732083	Lepeophtheirus salmonis	exon
EMLSAE00000023156	EMLSAE00000023156-732084	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto777999	auto777999	Lepeophtheirus salmonis	polypeptide
EMLSAP00000005299	EMLSAP00000005299	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s282:475306..478588+

protein sequence of EMLSAP00000005299

>EMLSAP00000005299 ID=EMLSAP00000005299|Name=EMLSAP00000005299|organism=Lepeophtheirus salmonis|type=polypeptide|length=182bp
MRRHFFNNAESGVLKTNTPKTAPPNPMMDPSMMTDMLKGNITNMLPMIVI
GGWINWHFSGFVTTKIPFPLTLRFKPMLQRGIELMSLDASWVSSASWYFL
NVFGLRSIYDLVLGENNVADQSRIMQDQMMMPANGMAXDYKQAFKGEWEA
LEITEHAWALKNAEQEMISAFERRKAEGTLYL

mRNA from alignment at LSalAtl2s282:475306..478588+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000005299-701146 ID=EMLSAT00000005299-701146|Name=EMLSAT00000005299|organism=Lepeophtheirus salmonis|type=mRNA|length=3283bp|location=Sequence derived from alignment at LSalAtl2s282:475306..478588+ (Lepeophtheirus salmonis)
TCCATTTGCACTCTAGTAAAAAAGCGCACACCAAAAGAAGATGTCGTTCC
ATATTCATTTTAGTATTCCCTGCGCTAGCTGTCTGTTCATTCATGCTTAG
CAGTGATTATCACTCAGTTCATCGATCAGAAATTAAATCATTGACATAGT
GTATTTTGGATGATGACGGATCCCNGAGCTACGACTGGACCCAGCCATCC
GGAACTGGGTCTTTATTCCCATTGTTTTGATCGCCTTTTTCATCGGGATA
ATTCGTCACTACGTGTCCATTCTTTTGAGTTCTTCCAAGAAAGTGGACTT
GAATCAGGTCCGGGAGTCTCAGATCCTTCTTCGCAGCCGTTCAATTCGTG
AGAATGCCAAATATTTGCCCAAGCACTCGTTTCTCATGCGCCGTCACTTC
TTCAACAATGCTGAGAGTGGAGTCCTCAAGACGAATACCCCTAAAACAGC
TCCCCCCAATCCAATGATGGACCCCAGTATGATGACGGACATGCTCAAGG
GTAACATTACTAACATGTTGCCAATGATTGTAATTGGAGGATGGATCAAC
TGGCATTTCTCAGGCTTTGTCACTACCAAAATCCCTTTTCCCCTCACTCT
TCGTTTCAAGCCTATGCTTCAAAGAGGCATTGAACTCATGAGTCTAGATG
CTTCATGGGTCTCCTCCGCCTCCTGGTACTTTCTTAACGTTTTCGGACTA
CGATCTATTTATGACTTAGTTCTCGGAGAAAATAATGGTAGTACATAATA
TAAGACAATAAACCTTCTATTATATTCTATTTTGTAATTACCCTCGTTCA
TTTTATATTTTAGTTGCGGATCAATCAAGAATCATGCAGGACCAGATGAT
GATGCCTGCCAACGGAATGGCTAKCGACTATAAACAGGCCTTCAAAGGGG
AATGGGAAGCACTGGAAATCACTGAACATGCTTGGGCTCTCAAAAATGCT
GAGCAGGAAATGATCTCTGCTTTTGAAAGAAGAAAGGCGGAAGGAACACT
CTACTTATAATTCTATTGTTCGACCCTAAATTGTAATCTTTTTTCCCCGT
TCATTCTTTGTATAAAATTGATTAGTTAGTATACGTATGTTCTGTTGTTT
TAAAATTTGTATTTCGTTAATTTATTGTAATTAATCATTAATTATATTCA
AAATATCAAGTTCCTTTCATTAAGTTTTAGGCCAATTTAGAGTGCACATT
CCTTCCTTGAAAGTTCAGAGACTCATATTGAGAATCTAACGTAATAAATC
GATACCATACAAAATGTATMGGAGCCGTAGAGAAGTGCCAAAGGGCATGA
GAGTCCAGTATCCACCAGATCGGAGGAAAGTCTAATATTTCTAACAATAT
GGAGCCATTTAACAAGAGTATTGCTATTACTCCGAGTTTTACATGCTTTT
CCCTTTTCCACCTCACCCCAGCCCAAGCAAACCAACAAACACTATWAAGA
SCKCCCACGGCAATGTTANCCATCATWTTMTAGCCATAATCAAATCTTAT
TATTGCCATGTAGTATATATGTTGACAAAAAAAGGCCATCATTAGACTCA
CCAATCCTAGTGAAAATAAAGGATCCGATTGCCCGTATAATTTAAGGAAA
AATGCAATAAGGGAGTAAGACACGACACTGAAAGCAGACAAATAGTCCAT
TTTCTCTGTAAAATTATTGTCCTTTGTATGAAACACTGTTGACCAAGTCC
AAGTATTAATCGACACTAGAGCATNNNAAGGTCCATACTTGGTACATGTG
CGTCCGGGGATTGACTGCTTCTCGATATTTCATTATGAGATAGACATGCG
GGATCAAATTAAGGATTGAAGCCAGGACAGATGCTGGTTCTTGAATCCCG
AAAAGTCTCACAAATGGCCATTTTCCGTGAAATTGAGGAATTTTAAGTCC
TCTCCTTTGAAATTGATCCACTGTCTTCCACATGCATTCATATCCACAAT
CTTCTGAACAAGTCCATCCAAATATTCTTTCCAACAATGGCTGATTGTTT
CGAAATGTGATGATAGAGGACTCTGAACAGTTTAAGGATTCGCACGCAAT
GAGGCAACGCCTCTGAATGTTTGAAGAATCTCCCAATGATCCTTCCACAA
TAAATGGAACATATAAAAAATACAATATACACAAATAGATTGAAGGTGTC
ATCATAATGAATTAAAATGAACTGATATATTTTCGGATTTGATAGACATA
GGACGTATTAAATTAAGCTGTACTCCTCATGGGGGGAGATACAAGAATTA
CCCCATCACCACGGACAAATAGCATTGGTATATTCCTTTTGGTAGTCCTG
TACACTTCTTCATAGGTTTCTTCATCAATTTCAATTGAAGTAACGGTTTC
CTCTACTTCTCCGAGGATCATATTTAAATGCTGATCATATGCCTGAAAAT
AAAAGGAAGCCCTCTAACTAAGTTGTATAATAAATAGATTCAATTTTCCC
AGGTAGTCTCTTATTGCAATGCATATATCTCATAAGATTTATTTATTACC
AAATGGAGATATGTTTGCATTTATTGATACTGGATTTAAAACATGGATTT
GAGACAAAGAGGGAACAACCGTTAGAAACTACTGAAAAATGCATAGTGAA
TACTAATCAAGGCTGAGAAAAGCATGGCCGATAAGAATTTATAAGCTTAA
TAGTAACATATTTGGATGTTTAAATTAATCACATTGATACGAAGTAAGAC
TATCTCCCAAGTCATATTATTAATATCTGAGCAACACTACTATTTAGAAA
TGGGAAGATAAAAAGGGATGTTGATATTTTTCACTAAAAAAACTGGTAAA
CATCAAGGATCCCATTCACTAATATTCCTAAATTAGGGAAGGATATCTTA
AGGGATTTAAGTAATTTGAATAGTCTACCTGGAATAATCCAAGGGGAAGA
GAGAGAGAGAGAGAAAATAAATAAATGAAGATTCCGCCATTCAATTCGGA
GGGAAAACCTAATTCAATGAATTAAAAATGAGTATTAAAAGATTACTTAC
GTTTAATCGACCCTTTAACTCTCTTTCATTCCGCATTTTAACGTAAATCC
TTTCATCCAAGGAGAGACGAATCAAATCAAGAGGTTCTTCAACTGTTAAG
GCTGCGCCAGCATTAGCCTGAAATCAAGCCAACCAAGAATTGTTTTAACC
TCTGAATAAACTATGTTTTGGTCCCCTCCCCCCCTCCCTATCTAAAAAAC
AGTAATATTTGTAATAACCTAATGGATACTATGTACATATATATTTGAAG
TCATGTAAGTCTGGATGGACATTAAAAATGAAG

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