Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
26s proteasome non-atpase regulatory subunit 4snap_masked-scaffold187_size272365-processed-gene-1.19gene
26s proteasome non-atpase regulatory subunit 6snap_masked-scaffold261_size233860-processed-gene-1.21gene
26s proteasome non-atpase regulatory subunit 7maker-scaffold1063_size65393-snap-gene-0.13gene
26s proteasome non-atpase regulatory subunit 8maker-scaffold619_size123246-snap-gene-0.32gene
27 kda hemolymphmaker-scaffold299_size217019-snap-gene-1.32gene
28s ribosomal protein mitochondrialmaker-scaffold49_size462716-snap-gene-1.22gene
28s ribosomal protein mitochondrialmaker-scaffold810_size94089-snap-gene-0.17gene
28s ribosomal protein mitochondrialmaker-scaffold918_size81203-snap-gene-0.17gene
28s ribosomal protein mitochondrialsnap_masked-scaffold100_size373717-processed-gene-2.36gene
28s ribosomal protein mitochondrialsnap_masked-scaffold104_size368486-processed-gene-2.3gene
28s ribosomal protein mitochondrialsnap_masked-scaffold1570_size35393-processed-gene-0.8gene
28s ribosomal protein mitochondrialsnap_masked-scaffold934_size79169-processed-gene-0.21gene
28s ribosomal protein mitochondrial precursormaker-scaffold41_size498431-snap-gene-1.15gene
28s ribosomal protein mitochondrial precursorsnap_masked-scaffold450_size166944-processed-gene-0.11gene
2-acylglycerol o-acyltransferase 1maker-scaffold449_size167299-snap-gene-0.17gene
2-amino-3-carboxymuconate-6-semialdehyde decarboxylasemaker-scaffold109_size355148-snap-gene-2.29gene
2-amino-3-ketobutyrate coenzyme a ligasemaker-scaffold164_size294842-snap-gene-1.2gene
2-amino-3-ketobutyrate coenzyme a mitochondrialmaker-scaffold1333_size47127-snap-gene-0.9gene
2-amino-3-ketobutyrate ligasemaker-scaffold9278_size2458-snap-gene-0.0gene
2-amino-3-ketobutyrate ligasesnap_masked-scaffold2_size2283618-processed-gene-16.37gene
2 -cyclic-nucleotide 3 -phosphodiesterase-likemaker-scaffold462_size163801-snap-gene-0.47gene
2-hydroxyacid dehydrogenasemaker-scaffold6902_size3520-snap-gene-0.4gene
2-hydroxyacid dehydrogenasesnap_masked-scaffold2_size2283618-processed-gene-19.5gene
2-hydroxyacid dehydrogenasesnap_masked-scaffold4071_size6761-processed-gene-0.5gene
2-hydroxy-acid oxidasesnap_masked-scaffold1_size3401120-processed-gene-16.23gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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