Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
3-oxoacid - b subunitmaker-scaffold500_size154911-snap-gene-0.1gene
3-oxoacid - b subunitsnap_masked-scaffold5361_size4713-processed-gene-0.1gene
3-oxoacid -transferasemaker-scaffold5770_size4347-snap-gene-0.3gene
3-oxoacyl-acp synthasemaker-scaffold247_size239117-snap-gene-1.19gene
3-oxoacyl-acp synthasemaker-scaffold891_size84600-snap-gene-0.3gene
3-oxoacyl-acp synthasesnap_masked-scaffold1_size3401120-processed-gene-24.21gene
3-oxoacyl-acp synthasesnap_masked-scaffold2858_size11798-processed-gene-0.0gene
3-oxoacyl-acyl-carrier-protein reductasemaker-scaffold76_size406464-snap-gene-2.15gene
3-phosphoglycerate dehydrogenasesnap_masked-scaffold6230_size4028-processed-gene-0.1gene
3-phosphoinositide-dependent protein kinase 1maker-scaffold191_size271209-snap-gene-1.33gene
40s ribosomal protein s11maker-scaffold626_size122949-snap-gene-0.26gene
40s ribosomal protein s14maker-scaffold550_size154339-snap-gene-0.23gene
40s ribosomal protein s15aamaker-scaffold857_size87770-snap-gene-0.23gene
40s ribosomal protein s16-likemaker-scaffold272_size230267-snap-gene-0.18gene
40s ribosomal protein s18maker-scaffold397_size184017-snap-gene-0.44gene
40s ribosomal protein s19maker-scaffold515_size150689-snap-gene-0.41gene
40s ribosomal protein s2maker-scaffold703_size109190-snap-gene-0.23gene
40s ribosomal protein s20- partialsnap_masked-scaffold11_size778918-processed-gene-6.20gene
40s ribosomal protein s21maker-scaffold1058_size66152-snap-gene-0.10gene
40s ribosomal protein s24maker-scaffold1280_size50848-snap-gene-0.11gene
40s ribosomal protein s26snap_masked-scaffold12_size759060-processed-gene-6.9gene
40s ribosomal protein s27maker-scaffold1256_size52432-snap-gene-0.14gene
40s ribosomal protein s30snap_masked-scaffold397_size184017-processed-gene-0.8gene
40s ribosomal protein s3amaker-scaffold631_size122145-snap-gene-0.46gene
40s ribosomal protein s4maker-scaffold579_size130606-snap-gene-0.19gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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