Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
60s ribosomal protein l11maker-scaffold109_size355148-snap-gene-1.28gene
60s ribosomal protein l13snap_masked-scaffold1087_size63509-processed-gene-0.8gene
60s ribosomal protein l14maker-scaffold266_size231069-snap-gene-1.22gene
60s ribosomal protein l15maker-scaffold193_size270907-snap-gene-0.12gene
60s ribosomal protein l17maker-scaffold505_size153196-snap-gene-0.21gene
60s ribosomal protein l18amaker-scaffold1207_size55689-snap-gene-0.13gene
60s ribosomal protein l21maker-scaffold1526_size37455-snap-gene-0.11gene
60s ribosomal protein l23maker-scaffold441_size170131-snap-gene-0.37gene
60s ribosomal protein l23amaker-scaffold245_size240363-snap-gene-1.26gene
60s ribosomal protein l24maker-scaffold631_size122145-snap-gene-0.34gene
60s ribosomal protein l27maker-scaffold1323_size47899-snap-gene-0.17gene
60s ribosomal protein l27amaker-scaffold646_size120253-snap-gene-0.18gene
60s ribosomal protein l27asnap_masked-scaffold127_size327531-processed-gene-2.17gene
60s ribosomal protein l31snap_masked-scaffold96_size378025-processed-gene-2.10gene
60s ribosomal protein l34maker-scaffold22_size673200-snap-gene-1.18gene
60s ribosomal protein l36maker-scaffold115_size343722-snap-gene-2.19gene
60s ribosomal protein l37amaker-scaffold105_size367834-snap-gene-2.32gene
60s ribosomal protein l4maker-scaffold42_size484952-snap-gene-3.23gene
60s ribosomal protein l44maker-scaffold316_size209483-snap-gene-1.40gene
60s ribosomal protein l7maker-scaffold580_size130538-snap-gene-0.23gene
60s ribosomal protein l8snap_masked-scaffold19_size710362-processed-gene-0.17gene
60s ribosomal protein l9maker-scaffold11_size778918-snap-gene-6.45gene
6-phosphofructo-2-kinase fructose- -biphosphatase 3snap_masked-scaffold263_size232787-processed-gene-0.5gene
6-phosphofructo-2-kinase fructose- -bisphosphatasesnap_masked-scaffold1542_size36322-processed-gene-0.2gene
6-phosphofructo-2-kinase fructose- -bisphosphatase 1 isoform x3maker-scaffold1038_size68074-snap-gene-0.20gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads