EMLSAG00000002978, EMLSAG00000002978-685744 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002978 vs. C. finmarchicus
Match: gi|592810226|gb|GAXK01144342.1| (TSA: Calanus finmarchicus comp366374_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 2.406e+0 Identity = 32/133 (24.06%), Postives = 47/133 (35.34%), Query Frame = 0 Query: 22 AYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERRCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVC 154 YD+E C + ED+C E C + Y V + K C+ V F +C E+ C +E C+ C I +C R C+ K + + V C S C + VC Sbjct: 737 GYDNEGDDCEEYEDFCEEQEIKCSKEETYCVSKEKKCAKFEDNCW-----TVVFYTEC--EQECKQY--NEICKKEEKRCLKNDI--VCKRAGKICKKKAEAKCIKHSVI--------CKESEVKCMDTKQVC 1078
BLAST of EMLSAG00000002978 vs. C. finmarchicus
Match: gi|592751595|gb|GAXK01202818.1| (TSA: Calanus finmarchicus comp343572_c0_seq10 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 8.732e+0 Identity = 24/82 (29.27%), Postives = 37/82 (45.12%), Query Frame = 0 Query: 31 LDKEDYCTAD------EWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERRCDNLIRDEYCENNRN---LCNH 103 +D YCT E C + Y C R C C C+ + G+CV +ND F ++ ++ C+ N+N LC+H Sbjct: 267 VDGTCYCTKGFYGPLCENKCSNGTYGENCSRKCNCSSGYSCHHISGECVKCSNDTFGDK------CEQACDCNKNGTALCSH 494
BLAST of EMLSAG00000002978 vs. C. finmarchicus
Match: gi|592751596|gb|GAXK01202817.1| (TSA: Calanus finmarchicus comp343572_c0_seq9 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 9.344e+0 Identity = 24/82 (29.27%), Postives = 37/82 (45.12%), Query Frame = 0 Query: 31 LDKEDYCTAD------EWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERRCDNLIRDEYCENNRN---LCNH 103 +D YCT E C + Y C R C C C+ + G+CV +ND F ++ ++ C+ N+N LC+H Sbjct: 267 VDGTCYCTKGFYGPLCENKCSNGTYGENCSRKCNCSSGYSCHHISGECVKCSNDTFGDK------CEQACDCNKNGTALCSH 494
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000002978 (pep:novel supercontig:LSalAtl2s:LSalAtl2s170:166204:168625:1 gene:EMLSAG00000002978 transcript:EMLSAT00000002978 description:"maker-LSalAtl2s170-snap-gene-1.20") HSP 1 Score: 343.969 bits (881), Expect = 7.011e-122 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 Query: 1 MRSQQELRIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERRCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCTSGCRHHHIH 168 MRSQQELRIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERRCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCTSGCRHHHIH Sbjct: 1 MRSQQELRIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERRCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCTSGCRHHHIH 168
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000011280 (pep:novel supercontig:LSalAtl2s:LSalAtl2s772:397975:398789:-1 gene:EMLSAG00000011280 transcript:EMLSAT00000011280 description:"maker-LSalAtl2s772-augustus-gene-3.36") HSP 1 Score: 116.316 bits (290), Expect = 1.028e-32 Identity = 66/170 (38.82%), Postives = 96/170 (56.47%), Query Frame = 0 Query: 7 LRIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNE-------------RRCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCTSGCR 163 ++I + L+LG +D+ C + CT DE+ C+ P+YY C ++CGCK G C D +C+ + C N+ C+NL+ D+ CE N CN ++ YLCA+TCG+C CRNKM S+ VC+ F + YC SS + IMRDVC+ +C+SGCR Sbjct: 5 IQISILSTLILGVFGGFDN---ICKNTMTTCTRDEFRCMDPEYYFQCSKACGCK--GPCLDPNAECLGNSLICLNDPNRNACPRSCGVCEGCNNLVHDDICEINAYRCNAYNVKYLCAKTCGKCSETCRNKMASDDVCDRFHRFGYCLRSSNYSSIMRDVCYGTCSSGCR 169
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000002982 (pep:novel supercontig:LSalAtl2s:LSalAtl2s170:193433:195225:1 gene:EMLSAG00000002982 transcript:EMLSAT00000002982 description:"maker-LSalAtl2s170-augustus-gene-2.7") HSP 1 Score: 101.293 bits (251), Expect = 2.717e-27 Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 0 Query: 5 QELRIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERRCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCTSGCRHHHI 167 Q R+++ + +G +D C DK C AD C+ P YY C R+CGC C++L++ C N + CN ++LYLC+ TCG+C+ CRNKM S+ VC AF R YC +++ +MRD+C A+CTSGCR ++ Sbjct: 3 QVSRLIILSCIFIGALGGFDXT---CADKRRDCKADNVLCMQPYYYFQCSRTCGCTG-----------------------CNDLVKQTICALNVHRCNEYNVLYLCSNTCGKCQERCRNKMGSDYVCAAFNARGYCYSTNKHSRVMRDICSATCTSGCRIKNL 139
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000006101 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3321:782:1958:1 gene:EMLSAG00000006101 transcript:EMLSAT00000006101 description:"maker-LSalAtl2s3321-augustus-gene-0.1") HSP 1 Score: 98.9821 bits (245), Expect = 2.772e-26 Identity = 59/172 (34.30%), Postives = 91/172 (52.91%), Query Frame = 0 Query: 7 LRIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCF--NERR-----------CDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCTSGCRHH 165 ++I + AL+LG ++ N P YY C ++CGC C D DC++ ++ C +ERR C+NL+ ++ C+ N + CN ++ YLCA+TCG+C CRNK+ ++ VCN F K YC +S + IM +VCH +CTSGCR++ Sbjct: 5 IQISILSALILGVFGGFE------------------NVWSPAYYFQCSQACGCT--DSCLDPSADCLNESDICLKRDERRRCPRFCGACEGCNNLVHNDICDKNIHRCNEYNVRYLCAQTCGQCSKSCRNKLAADDVCNTFHKYGYCSRTSQYSTIMNEVCHGTCTSGCRNN 156
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000012207 (pep:novel supercontig:LSalAtl2s:LSalAtl2s884:37024:45519:-1 gene:EMLSAG00000012207 transcript:EMLSAT00000012207 description:"maker-LSalAtl2s884-augustus-gene-1.11") HSP 1 Score: 90.8929 bits (224), Expect = 2.611e-23 Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 0 Query: 29 YCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERR-----------CDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCTS 160 YC D+ C AD +C+ P YY CRR+CGCK G C D C + C + C+NLI+DE C+ R LC+ ++ Y CA TC +C+ +CRNK+ VCN F + YC + +I+R +C +C S Sbjct: 3 YCRDEVHNCEADATSCIKPAYYFKCRRTCGCK--GNCQDGDSACFKIPDRCLSTNGNCYRFCGLCDGCENLIKDELCKELRYLCHVENVKYFCAGTCNKCKYECRNKVAFTAVCNNFKAKGYCKMDNRHSYIIRKICAKACES 143
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000007109 (pep:novel supercontig:LSalAtl2s:LSalAtl2s400:180525:182688:-1 gene:EMLSAG00000007109 transcript:EMLSAT00000007109 description:"maker-LSalAtl2s400-augustus-gene-1.7") HSP 1 Score: 85.1149 bits (209), Expect = 7.237e-21 Identity = 47/166 (28.31%), Postives = 80/166 (48.19%), Query Frame = 0 Query: 7 LRIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNER-------------RCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCT 159 + I LF + + C D++ C D + C++P+YY C+ +CGC+ R C D C+ F N C N+ RC++L+ + C +NLC++ ++ Y C TC C CR+ + + VC +F K +CD++S + M+ C +C Sbjct: 25 MTIRLFIIISFFLVVVNGQGNIICRDEQKICKPDAYKCMNPEYYFKCKETCGCESR--CTDKSIGCIQFPNRCLNQNQRVDCQRACGNCDRCEDLLNNLMCNELKNLCHNGNVRYFCPATCRLCEKACRDNLPYDIVCRSFRKSGFCDSNSIYNRFMQSACQKTCN 188
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000004640 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2425:15271:17023:1 gene:EMLSAG00000004640 transcript:EMLSAT00000004640 description:"maker-LSalAtl2s2425-augustus-gene-0.2") HSP 1 Score: 80.1073 bits (196), Expect = 3.416e-19 Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 0 Query: 8 RIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNERR-------------CDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASCT 159 R+++ + L AY D C D+ + C + + C++P+YY C++SCGC+ C D C+ N C + + C++L+ C +NLC++ ++ Y C TC C CR+ + N +CN F K YCD S + M+ C +C Sbjct: 4 RVLIIISFFL--VVAYGQGDRMCRDEMESCETNAYKCMNPEYYFKCKKSCGCE--SACTDKSIKCIQNPNKCLDRDQRFECQRVCGNCDGCEDLLEHLMCNELKNLCHNENVRYFCPATCRLCEKGCRDNLPYNMMCNNFKKSGYCDRKSIYNRFMQSACQKTCN 164
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000011279 (pep:novel supercontig:LSalAtl2s:LSalAtl2s772:382917:383509:-1 gene:EMLSAG00000011279 transcript:EMLSAT00000011279 description:"maker-LSalAtl2s772-augustus-gene-3.35") HSP 1 Score: 70.8626 bits (172), Expect = 4.015e-16 Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 0 Query: 7 LRIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNE-------------RRCDNLIRDEYCENNRNLCNHPSILYLCARTCGR 116 ++I + L+LG +D+ C + CT DE+ C+ P+YY C ++CGCK G C D +C+ + C N+ C+NL+ D+ CE N CN ++ YLCA TCG+ Sbjct: 5 IQISILSTLILGVFGGFDN---ICKNTMPTCTRDEFRCMDPEYYFQCSKACGCK--GPCLDPNAECLGNSLICLNDPNRNACPRSCGVCEGCNNLVHDDICEINAYRCNAYNVKYLCAETCGK 122
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000008527 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5266:2605:5358:1 gene:EMLSAG00000008527 transcript:EMLSAT00000008527 description:"maker-LSalAtl2s5266-augustus-gene-0.1") HSP 1 Score: 62.003 bits (149), Expect = 8.094e-13 Identity = 43/141 (30.50%), Postives = 62/141 (43.97%), Query Frame = 0 Query: 8 RIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCF--NERRCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPF 146 +I + AL+LG +++ C + C DE CL P YY C ++CGC G C D C+D + C +ERR C R CG C CRNK+ S+ C+ F + YC ++SP+ Sbjct: 33 QISIVSALILGVFGGFEN---VCKNTMPTCIRDEVRCLDPAYYFQCSKACGCT--GSCLDPNXGCLDXSTICIXKDERR------------------------RCPRFCGVCEESCRNKLASDDACDRFNQFGYCFSTSPY 144
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Match: EMLSAP00000005975 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:19068:19805:-1 gene:EMLSAG00000005975 transcript:EMLSAT00000005975 description:"maker-LSalAtl2s322-augustus-gene-0.10") HSP 1 Score: 53.9138 bits (128), Expect = 6.279e-10 Identity = 34/112 (30.36%), Postives = 47/112 (41.96%), Query Frame = 0 Query: 44 CLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCFNER-------------RCDNLIRDEYCENNRNLC-NHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCD 141 CL P Y C CG R +C D F C D ++ C C+++I CE R C S++Y C TCG C +DC + + +C F R YC+ Sbjct: 45 CLIPSYQWTCPEDCG-VCRARCKDFFAGCFDSSSLCLQSHMQKHCPKSCASCDECEDIISPRLCEQYRGRCKTDISVIYACRETCGLCDDDCNDAFVQESMCTIFESRGYCN 155
BLAST of EMLSAG00000002978 vs. nr
Match: gi|290462093|gb|ADD24094.1| (protein ZK643.6 [Lepeophtheirus salmonis]) HSP 1 Score: 77.411 bits (189), Expect = 6.306e-15 Identity = 45/164 (27.44%), Postives = 79/164 (48.17%), Query Frame = 0 Query: 8 RIVLFCALVLGTTSAYDHEDPYCLDKEDYCTADEWNCLHPQYYHVCRRSCGCKRRGQCYDLFGDCVDFTNDCF-------------NERRCDNLIRDEYCENNRNLCNHPSILYLCARTCGRCRNDCRNKMLSNKVCNAFVKRRYCDTSSPFCWIMRDVCHASC 158 R+++ + L + + C ++ + C + + C++P+YY C++SCGC+ C D C++ N C N RC++L+ C +NLCN+ ++ Y C TC C CR+ + N+VC+ F K +CD S + M+ C +C Sbjct: 4 RVLIIISFFLVVVNG--QGNSTCENEMESCETNTFKCMNPEYYFKCKKSCGCE--SACTDTSIKCINNPNKCLDRDQRLECQRACGNCDRCEDLLEHIMCNQLKNLCNNGNVRYFCPATCRLCEKSCRDNLPYNRVCHNFKKSGFCDRKSIYNRFMKSACQKTC 163 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002978 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002978 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 3
BLAST of EMLSAG00000002978 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 12
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BLAST of EMLSAG00000002978 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002978 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002978 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000002978 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s170:166204..168625+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002978-685744 ID=EMLSAG00000002978-685744|Name=EMLSAG00000002978|organism=Lepeophtheirus salmonis|type=gene|length=2422bp|location=Sequence derived from alignment at LSalAtl2s170:166204..168625+ (Lepeophtheirus salmonis)back to top Add to Basket
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