Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
30s ribosomal protein s9snap_masked-scaffold11254_size2049-processed-gene-0.1gene
30s ribosomal protein s9snap_masked-scaffold4463_size5909-processed-gene-0.0gene
30s ribosomal protein s9snap_masked-scaffold7384_size3210-processed-gene-0.1gene
33 kda inner dynein arm light axonemal-likemaker-scaffold756_size101639-snap-gene-0.20gene
3 -5 exonucleasemaker-scaffold42_size484952-snap-gene-1.14gene
39s ribosomal protein mitochondrialmaker-scaffold11_size778918-snap-gene-6.47gene
39s ribosomal protein mitochondrialmaker-scaffold1210_size55525-snap-gene-0.25gene
39s ribosomal protein mitochondrialmaker-scaffold1518_size37722-snap-gene-0.13gene
39s ribosomal protein mitochondrialmaker-scaffold170_size291898-snap-gene-1.44gene
39s ribosomal protein mitochondrialmaker-scaffold180_size281610-snap-gene-0.40gene
39s ribosomal protein mitochondrialmaker-scaffold191_size271209-snap-gene-0.9gene
39s ribosomal protein mitochondrialmaker-scaffold304_size215464-snap-gene-0.14gene
39s ribosomal protein mitochondrialmaker-scaffold395_size185061-snap-gene-0.36gene
39s ribosomal protein mitochondrialmaker-scaffold50_size457468-snap-gene-1.17gene
39s ribosomal protein mitochondrialsnap_masked-scaffold15_size728074-processed-gene-0.1gene
39s ribosomal protein mitochondrialsnap_masked-scaffold934_size79169-processed-gene-0.11gene
39s ribosomal protein mitochondrial precursormaker-scaffold112_size353035-snap-gene-0.8gene
39s ribosomal protein mitochondrial precursormaker-scaffold119_size336447-snap-gene-2.35gene
39s ribosomal protein mitochondrial precursormaker-scaffold188_size271682-snap-gene-1.35gene
39s ribosomal protein mitochondrial precursormaker-scaffold344_size201325-snap-gene-1.18gene
39s ribosomal protein mitochondrial precursormaker-scaffold90_size386344-snap-gene-1.23gene
39s ribosomal protein mitochondrial precursorsnap_masked-scaffold521_size146803-processed-gene-0.1gene
3-carboxy- -muconate cycloisomerasesnap_masked-scaffold2181_size19268-processed-gene-0.1gene
3-chlorobenzoate- -dioxygenase oxygenase subunitmaker-scaffold341_size202020-snap-gene-0.7gene
3-demethylubiquinone-9 3-methyltransferasemaker-scaffold674_size113878-snap-gene-0.18gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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